RNA id: XM_039784765.1


Basic Information

Item Value
RNA id XM_039784765.1
length 3716
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120548489
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 24331872 ~ 24336022 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAACGCAGCAAAGCCTTCAGTGCGGCTACAGGAAACTGTACCATATGAAAATACAGTCTCAAAAATGCACACAATATGGTGTGCCTTGTAATAAACAGTCGAAGAGAAATACTGAAGACAAGAAGATTgtcacagtaaacacacactcCTGTCAGTCAGTCTCCGCTTTGTTGCTTTGTACATCCCGCTGCATAATGAACTGCTTCTGCAGCTGCACTTCACAAAGAATCTGTCTGGCTGGTGTTGATTTGAGCTGTGCTGAATATGTTTGCGACTCTttctacaggagacattagaaAAGCAACAGGAGTGTCTAAAGAGGCAAAGGGAAGCCGTGAAATACAGACTGAAAAAACTGGCAGCACGGCAATCAGAAATTACAAAAAGGTCCACAGTGATAAAAGAGAACATCATACGGAAATATCTGGAGATCCGGGCCGTCCTTGATGAGGACCTGAGGATCACCCTGTCCCACCTGGAGATGGAGGAGCGGGCTGCAGTCTCTGCCCTGGATGGGCTGATGGAAAGGAACTGTTCTCTAATCCAGGAAATAGAGCAGGACCTGGCCAGACTCACTGTGGCAATGGACCAGACCGACACAGACCCTGATACAATGTCTGTCTTTTCATACCCTGAGCAGCAAGACACGGAGACAGTGGACAGAGTGATGGATCTGCTAAACAGCTCAGACCCGAGCAGTGTGAGGCTGGACGAAGCTAAAGCCGAGCAGATCCTCAGCCTCGCCAACAACATGCTCCTGCTGATCAGCTCACAGACGCCTATAATCAAGAGCTTCACCAAGAGTTATTCCAGCGAGGTGTGTTTGGATCCGGAGACGGCCCACCCAAAGCTGATCATCTCCCCCCGTGGGGACAGCGCCATCTACACAGACACCTGGCAGCAACTTCCTGACCTCCCTGGACGCTTTGACACCACCCTCAATGTCATCAGCTTGCAAGGATTCAGCTTTGGCCACCATTACTGGGAGATTGATGTGACTGGGAAGACTTACTGGGAGCTGGGCGTCACCTATCCCAACATTCCCCGCAAGGGCACCACTGAGGACTGCTGGCTGGGCCGGGGGGACGAGTCCTGGTGTGTGGAGTTCTTTGATGGGGAGTATACAGCCTGGCACGGAGGGGTGCCCCATCAGCTGCCTTTCACCAAACGCTTCTGTCGGATTGGTGTTTTGTGTAGTTTCCCTGCAGGGTTGGTGACGTTTCTTGAGGCAGAGAACATGACGCCGCTGTTCTCCTTCTGTGCAGGAACCTTCTCAGACTGCCTCCACCTGGCTCTGTGTCCTGGCCATGACCACAATGGCACCAATGCGCAGCCTATTGTGATCTGTAATGCTCCATCTCCTACCAGTGATCTCTGATTAGCTTTGAGGCTCCACAGAAAAGCTTTTAGTAATTTGTTGCTAAGGCCCCACTTTTTAATAATGCACCAATTATAAAAGTTTATAAGCAAGTAATGgcttcatttatatatatataaaaaaattatgtcTTTGGACTAAACATTTAATGAAGAATATGTcactaattaaataaaacaatgaatCTGTTACAGATGCTTTCGGTGTCATAATAGGCTACCAGATTTTTGAGAACATTAAACATTCACAGTATGAACAGTAATACTTGGTTGCTGGACTAAACTGGAAGTGTAACCTATTTGGATTGCCGTGATTGATACATTCGTGGTTTAATTAAAGATAATCACACTTCTGTATTTGAATTCTAGAAGAaccaaaatataatatatataaatatagatatatacgcttttgcatcattttgtattcattctattttatttgtatttaatttaGCCAACAAGATAATATATtatggatttttgtttttataattgtTGGTATAATTATAGAAAATGTTGTCTGTTAGCACTCAACTCATCTCATTGTTTGTGATTAGGGATCAGATTTCAATTCAGACATCCCACTGCATCCCAATACAATTTAATTTCCCATGTGTGGACTAGGTTCAGCAGCACTAAATTACGACCTAAGGTCAAGGATCTGcattacaaacattacacaCGGTGACGCCACATTCCTCTGCTTATGTCAGTGAATTTACTACTTTGAATTTACTCTCAAATGAAATGTGTTATGTAactaaaattgccttgccttgaatGCAAATCACGCAACACTTCGTGCAACAATACAAAGAACAGCTTTCACCGAGTACGACTCAGTTCCCTTCGTTCGTACCAAGGAGCATCAGATCGCTCGTTAAACGAAACATCACTACCTCATGGGGGATTCTTCCTCTGGGGAGCATGAATGTATGCACACATTTTGGTGCAATTCCATCcagtagatgttgagatatttcacataATAAGGGaaactttgacctgctggtggctCTATAGAAGAAAAGACAGGAAATCACTGAAGACATATAATTCATCCTCTGGACACCGTGGATATCTGTACCACATGACAATTCAGTTTTTGAGATATTTCTCTAAAAGCCCAAAACGTCAAATTCATAGTAGTACTCATGACAATCATTGTCATTTttggagatatttcagtctggaccaaagtggtggacagaTCGACATACCAACAGCCCAACAGGCTGAAAATCATCCACAGTACTAATGCTTTATTGATGAGTTATCCAGTTGTGgaatatctgtctgtctttctattTGGTAAAAATGTGGTTATAAGTCTTGGCAATCCATTTTATCATGGGTTTCtcttctttttaataatctaccCAGTGTAAAGTTGGaaatggtaataagctattaaTAAATGGAGTTTGGGCCAAATGGTCTAACAGTCCTCATGAATTAGAGATTTTGCTGAAGACACAAAGCAAATGTTGGGGCATAAACATAATCCATAACACATCACTAAATTCTTTATTAACCATTAATAAAGCTGTAAGTTACAACCAATAAACACATTATAAAGGGTGCATTATTAAAAGAATGGTAGCCTGCTTATACTGATAATAAATTATAGTAGGAAGATAGTTCCTCACAAGGAGAACACTACATTTCTCACAGTGCCTGTATTGCACTTTCAGATGAATGTACAATATATTAGAAGTGTGGCCCATCTCTTCATTAAGATCATTATACTGAGAAAAGCGGACCATGAAATTTTAATGCACTTTGAGTGTACATATTCTTTCTGTATGACAAAGTCTTGTTTAAgagtttcatttttatttggaaGTCATAGAAGTTACtgatacataaatatataagaaGTAGTATTACATTTTACTTAGTAATTTATCCTTAAATGCACCGAGTGTATTTGGATCCAAAGTCTGTGTTCAAACAAACAATTGGCTTTGCAAATATGCTCTCTGAGCCTTTGTGTTGCATTTGAGTGCATTCTTATCCTATTCAAACTAAATTCATTCTAATGAATTTCAACATGAAACAATCTTTCAAGGCTGGTAGAGATGATAATCTTGATGTTGCACCATTTATTTGTCCTGTTTAGGTGTTCCCTAACATGAGCAATGTTCTGCCTATTATAACTAAGAAAAATAAGTATCCAAGAGCACagtaaaaaatcaataaaagtgGGCACCTGGTTATATCACCtagtagagcgtgcgcccatatatagaggtttactcctcgacgtagcggccgcgggttcgactccgacctgcatgtcattccccctctctctcccctttcaagtctatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266595 lncRNA upstream 61820 24268273 ~ 24270052 (+) True G196332
TU266592 lncRNA upstream 61820 24268363 ~ 24270052 (+) False G196332
TU266594 lncRNA upstream 61886 24268363 ~ 24269986 (+) False G196332
TU266607 lncRNA upstream 167241 24164200 ~ 24164631 (+) True G196337
TU266606 lncRNA upstream 169657 24160613 ~ 24162215 (+) True G196336
TU266698 lncRNA downstream 69773 24405795 ~ 24426358 (+) False LOC120548495
TU266756 lncRNA downstream 303392 24639414 ~ 24639857 (+) True G196454
TU266759 lncRNA downstream 304677 24640699 ~ 24641876 (+) True G196457
TU266761 lncRNA downstream 305136 24641158 ~ 24641876 (+) False G196457
TU266762 lncRNA downstream 305136 24641158 ~ 24642057 (+) False G196457
XM_039783100.1 mRNA upstream 2631 24284646 ~ 24329241 (+) False ablim1a
XM_039783104.1 mRNA upstream 2631 24288042 ~ 24329241 (+) False ablim1a
XM_039783096.1 mRNA upstream 2631 24288044 ~ 24329241 (+) False ablim1a
XM_039783103.1 mRNA upstream 2631 24288045 ~ 24329241 (+) False ablim1a
XM_039783092.1 mRNA upstream 2631 24290005 ~ 24329241 (+) True ablim1a
XM_039784764.1 mRNA downstream 100 24336122 ~ 24340184 (+) True habp2
XM_039783571.1 mRNA downstream 21904 24357926 ~ 24367255 (+) False LOC120547848
XM_039784772.1 mRNA downstream 31932 24367954 ~ 24426502 (+) True LOC120548495
XM_039783731.1 mRNA downstream 118846 24454868 ~ 24494403 (+) False fgfr2
XM_039783728.1 mRNA downstream 118848 24454870 ~ 24494403 (+) True fgfr2
XR_005637111.1 other upstream 726298 23562283 ~ 23605574 (+) False disc1
XR_005637123.1 other upstream 1662405 22647914 ~ 22669467 (+) False tasp1
TU265655 other upstream 2816744 21514526 ~ 21515128 (+) True G195653
XR_005637114.1 other upstream 3000585 21318610 ~ 21331287 (+) False fbxo11a
TU265472 other upstream 3578063 20752773 ~ 20753809 (+) True G195518
XR_005637109.1 other downstream 21904 24357926 ~ 24367599 (+) True LOC120547848
TU266740 other downstream 228528 24564550 ~ 24569167 (+) True G196439
TU266801 other downstream 672490 25008512 ~ 25010761 (+) False dact2
TU267128 other downstream 1277385 25613407 ~ 25620675 (+) True prdx3
XR_005637133.1 other downstream 1481229 25817251 ~ 25824677 (+) False LOC120548053

Expression Profile