RNA id: XM_039784912.1


Basic Information

Item Value
RNA id XM_039784912.1
length 2569
RNA type mRNA
GC content 0.51
exon number 6
gene id march5
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 28412266 ~ 28447794 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCTATTTACGTTACCTTCGAGACGGCCCAGTTAATGGAGTCACGCGGCCACGCCAATACAACAAATGAGACCGTAGCAGATGTAAAGGggattttttttacttgaaataGATCATCGGTCACAGATAGATGCTGTCTATATTACAATGACCGCAAAGGAATAGTTTTAAGCTAAATACTTGGCTCGTTTGCAGCTGTCTTACCGTATCAACACAAGGGcctatgtagctagctagctagttaacgctCATTCCTCAGCTGCAGTAAATTAACAGGCgtgccattttattttattttatctataACGCAACTTATCTGCTTTGCCTAAAAGACAGCATTgggttttttgttgctttttcacgACAATGGCGGAACAGGGTGCAGCGGCCATGCAGAATTTGGACAGGAGCTGCTGGGTATGCTTTGCCACAGATGAGGACGACCGCACAGCAGAGTGGGTGCGTCCTTGTCGCTGCCGGGGCTCGACCAAATGGGTTCACCAGGCCTGTCTGCAGCGCTGGGTGGACGAGAAGCAACGAGGCAACAGCACCGCACGTGTGGCCTGCCCACAGTGCAATGCAGAATACCTCATCGTCTTTCCCAAACTGGGCCCCGTGGTTTACGTGCTGGACCTGGCCGACCGGCTCATCTCTAAGGCCGGCCCCTTCGCCGCCGCCGGCATCATGGTGGGCTCCATCTACTGGACTGCAGTCACCTACGGAGCAGTCACTGTCATGCAGGTGGTGGGCCATAAGGAGGGCCTGGACGTTATGGAGCGGGCCGACCCTCTGTTCCTGCTCATCGGCCTGCCCACCATCCCCGTCATGCTGATCCTCGGCAAGATGATCCGCTGGGAGGACTACGTCCTGCgtctgtggaggaagtactCCAACAAGCTGCAGATCCTCAACAGCATCTTCCCAAGGATCGGCTGCCCGGTTCCCCGCATCCCGGCAGAGGCCAGCCCCTTGGCAGACCACGTGTCGGCCACGCGGATCCTGTGCGGCGCCCTGGTCTTCCCCACCATCGCCACCATCGTGGGGAAGCTCATGTTCAGCAGCGTCAACTCCAACCTGCAGAGGACCATCCTGGGAGGCATCGCCTTTGTGGCCATCAAGGGGGCGTTTAAGGTGTACTTCAAACAGCAGCAGTACCTGAGGCAAGCCCACCGCAAGATCCTGGACTTCCCTGAGCAGGAGGAAGCCTGAGGAGGCTGCGCCGTCCGGAGGGGGGGGACAGCCGgaccccacacacagacacgcggGACTCTGAGCAGGAAGTGTTGGTGAAAACGGACTCGGGGGTCAGGGTCGGCCTCCCTTACGCCTCGACCCCTTCTGGAGCGATTCATCGCACGGCCGCTGACATTCACGCAAGGATCCCCACCGCCGCCACTACACGTTTTTAAACTTTTGACGCTTTTGGTAAAGTGAAGACGGATAACACTCGTCGACGCCGACTGGAGCATGTTTGCAGTCGGTGTGCGGTTATAGACACACACGTCGGAAAACCAAGGAGTCGTGCTTGTGTGACTCTCGGGTGGATTTGCTTCAACCACCACATAACTAACACTTATTGTAAACgtactgtattttaaagattaaaaagGCGGGCCATGTGTAATTTAGAaagttttataataataaatggtTGTTTTATAATTATTTCAAAGATTTGAAAAGTCCCCCTTTTGCCTAAGTTTGGGGTTTGTATTAAATGCAACTGTTCAGTGTGGTGTAGAATGTATTAACAATTAAACAATAATTAATGTATAAATCCTGATGCAGTAGCTACATTAACCCCAACCAGGAAGCATCAAGAGAGAAACGACCCGCTGAccacatgggggggggggggtttgagaCCCTGCAACTATGTGAGGgctctttgtttttgttcacagGCCTCGGCAGCGTTTGTCGTCTGTAGCTTCATCTCCGCTCAACAAAACGCTCGTCTGTCGTGTCCCAAAGCTACAGCACGTGGTCGAGCCTGTCGCCGCGAGACATTTACAGCAGACGGGTGGACGGATAATGGACGCTTTTGGTCCTCGGAGCTTTTTTTTGCTGTGACGGGATGTTCTACCGGGAAATCATCTGAAAAGCTTGGGGAGACTCGCTCACCTGATGGTCCAGCACTTTGCTCTGGGAAGAtgtgaaactttattttttatttgagctACAAATCCACTTTATTCCCCCAAACATGTGATGATAGGACTGTTGTGTTGCCCGAGTGCAAACTGCACCTCAGGTCAGCCTGCGGTTCTGAGGTAATGGACCTTTTCtcatggcagacatgttgacatttcgtagtaggaaaagcaccggtgtattcaaaaccattactgatggctgcattccacttaggagaggtcctggtattgtgcatgctgagtCACTggaatagcttactgggacacttgatggaactgagccatcgttaaggttatcaatgtcagctgtgcttttcctactatgacaagtccaaatgtctgctgtgaaaaaggtccattaccATGCAGATATAAGGGAAGCTTGGACACTGCTCATTGTGGGTGACATTTCT

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637196.1 lncRNA upstream 783 28409470 ~ 28411483 (+) True LOC120548567
TU267815 lncRNA upstream 109936 28300164 ~ 28302330 (+) False ccnj
TU267805 lncRNA upstream 160714 28250758 ~ 28251552 (+) True G197270
TU267770 lncRNA upstream 406107 28004577 ~ 28006159 (+) True G197237
TU267715 lncRNA upstream 807441 27569913 ~ 27604825 (+) False LOC120548047
TU267828 lncRNA downstream 1786 28449580 ~ 28452009 (+) False G197287
TU267829 lncRNA downstream 1786 28449580 ~ 28452009 (+) True G197287
TU267842 lncRNA downstream 17352 28465146 ~ 28474917 (+) True G197299
TU267942 lncRNA downstream 61184 28508978 ~ 28510477 (+) True G197378
TU267943 lncRNA downstream 62024 28509818 ~ 28510477 (+) False G197378
XM_039783782.1 mRNA upstream 61279 28320747 ~ 28350987 (+) True btaf1
XM_039782996.1 mRNA upstream 109933 28294205 ~ 28302333 (+) True ccnj
XM_039784137.1 mRNA upstream 136267 28231795 ~ 28275999 (+) False blnk
XM_039784138.1 mRNA upstream 136267 28231796 ~ 28275999 (+) False blnk
XM_039784139.1 mRNA upstream 136267 28255120 ~ 28275999 (+) True blnk
XM_039783043.1 mRNA downstream 39729 28487523 ~ 28508440 (+) True LOC120547570
XM_039783789.1 mRNA downstream 187534 28635328 ~ 28686068 (+) False LOC120547955
XM_039783790.1 mRNA downstream 190210 28638004 ~ 28686067 (+) True LOC120547955
XM_039783791.1 mRNA downstream 190341 28638135 ~ 28686067 (+) False LOC120547955
XM_039782955.1 mRNA downstream 316603 28764397 ~ 28770079 (+) True LOC120547521
XR_005637113.1 other upstream 1303126 26926418 ~ 27109140 (+) False LOC120547882
TU267563 other upstream 1676479 26725759 ~ 26735787 (+) False tmem254
TU267544 other upstream 1748481 26663159 ~ 26663785 (+) True G197053
unassigned_transcript_1122 other upstream 2429428 25982745 ~ 25982838 (+) True trnai-uau_2
XR_005637133.1 other upstream 2587589 25817251 ~ 25824677 (+) False LOC120548053
XR_005637159.1 other downstream 664894 29112688 ~ 29177494 (+) True LOC120548242
TU268101 other downstream 665088 29112882 ~ 29114881 (+) False LOC120548242
TU268132 other downstream 900631 29348425 ~ 29349928 (+) True G197531
TU268204 other downstream 1088725 29536519 ~ 29619016 (+) True LOC120547718
TU268202 other downstream 1147498 29595292 ~ 29596825 (+) False LOC120547718

Expression Profile