RNA id: TU270140


Basic Information

Item Value
RNA id TU270140
length 320
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G199230
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 521484 ~ 521803 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttaaaacgatttccactttttctactactctcactacttcaactactacaaacattcactggccagtcgttaccatgacaacagatacacacccagatactacaggcaggaatatgaacttcagtctgtcttctctcttctattctcttgttcaggtctgtctgtctgtcttctctcgctccccctctctatctctctttttccatctgcctctctatccctctctatccgtctctctctctttctctctctatccctctctctctttttctttcactctctccattcctccttctccctccctgtctctacctccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270137 lncRNA downstream 3045 514404 ~ 518439 (-) True G199227
TU270135 lncRNA downstream 5406 513427 ~ 516078 (-) False G199226
TU270134 lncRNA downstream 7514 513427 ~ 513970 (-) True G199226
TU270115 lncRNA downstream 64709 456284 ~ 456775 (-) True G199212
TU270113 lncRNA downstream 74355 446161 ~ 447129 (-) True G199210
TU270141 lncRNA upstream 1541 523344 ~ 523631 (-) True G199231
TU270146 lncRNA upstream 70196 591999 ~ 592230 (-) True G199235
TU270155 lncRNA upstream 106789 628592 ~ 628795 (-) True G199244
TU270156 lncRNA upstream 107008 628811 ~ 629160 (-) True G199245
TU270195 lncRNA upstream 281223 803026 ~ 803805 (-) True G199272
XM_039786586.1 mRNA downstream 145097 375236 ~ 376387 (-) True LOC120549575
XM_039786548.1 mRNA downstream 511449 7265 ~ 10035 (-) True LOC120549547
XM_039785379.1 mRNA upstream 177118 698921 ~ 701906 (-) True LOC120548861
XM_039785350.1 mRNA upstream 639877 1161680 ~ 1173622 (-) True LOC120548839
XM_039786655.1 mRNA upstream 678569 1200372 ~ 1200692 (-) True LOC120549623
XM_039785382.1 mRNA upstream 871544 1393347 ~ 1397966 (-) True LOC120548865
XM_039785020.1 mRNA upstream 1540692 2062495 ~ 2093597 (-) False gphb5
TU270158 other upstream 108833 630636 ~ 631498 (-) True G199247
TU270246 other upstream 432204 954007 ~ 958248 (-) True G199305
TU270315 other upstream 568164 1089967 ~ 1090979 (-) True G199358
XR_005637591.1 other upstream 756403 1278206 ~ 1278324 (-) True LOC120550115
XR_005637685.1 other upstream 769949 1291752 ~ 1291870 (-) True LOC120550213

Expression Profile