RNA id: TU270387


Basic Information

Item Value
RNA id TU270387
length 464
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id LOC120548741
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 1538903 ~ 1545508 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGAACAGAGTAGGAGAGGCACATGGGAGAAGGAGGAGGCCATGGAGAACATGAGGAATATCTGAGAGTATGAGAAGGACAGCAGAGGAGGGAAGACCCCAAAGCGTGACAGATCATACGGAACAGGTGGAGAAGCAGCCAGCCGATCGGACGAAGGGACACGGGAAAAGAACCTAGGAGCCCTGAAGCTACAATCAAGAAAACGCCAACACCGACCGCTAGCGGCAAAAGTAGGAGAGTGTAAGACCTCTCCCTCCCGCAGTTTCTGTTACAGGTCATGCCCCAAGGAAGGTGACCGGTACGAAGGAGGCTGCTTCCTGGCCGAGCCCTGTGGACATTTTAAGCCAAGACTCCTGTTCTGCCTGGACTGTTTTAGCttgatttttatttagtttttagtttaaaatcctttttttaactaattttattgttattccttttaaataaatctgtttACTCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270327 lncRNA downstream 422310 1116373 ~ 1116593 (-) True G199368
TU270317 lncRNA downstream 447924 1090596 ~ 1090979 (-) False G199358
TU270303 lncRNA downstream 473300 1065389 ~ 1065603 (-) True G199347
TU270299 lncRNA downstream 476084 1062513 ~ 1062819 (-) True G199343
TU270297 lncRNA downstream 477496 1060956 ~ 1061407 (-) True G199341
TU270416 lncRNA upstream 158599 1698046 ~ 1698258 (-) True G199448
TU270419 lncRNA upstream 201452 1740899 ~ 1741332 (-) True G199451
TU270423 lncRNA upstream 231294 1770741 ~ 1771273 (-) True G199455
TU270493 lncRNA upstream 421084 1960531 ~ 1963685 (-) True G199509
TU270498 lncRNA upstream 464250 2003697 ~ 2033513 (-) True G199511
XM_039785382.1 mRNA downstream 140937 1393347 ~ 1397966 (-) True LOC120548865
XM_039786655.1 mRNA downstream 338211 1200372 ~ 1200692 (-) True LOC120549623
XM_039785350.1 mRNA downstream 365281 1161680 ~ 1173622 (-) True LOC120548839
XM_039785379.1 mRNA downstream 836997 698921 ~ 701906 (-) True LOC120548861
XM_039786586.1 mRNA downstream 1162516 375236 ~ 376387 (-) True LOC120549575
XM_039785020.1 mRNA upstream 523048 2062495 ~ 2093597 (-) False gphb5
XM_039785019.1 mRNA upstream 523048 2062495 ~ 2091939 (-) False gphb5
XM_039785021.1 mRNA upstream 533175 2072622 ~ 2091939 (-) True gphb5
XM_039785388.1 mRNA upstream 650915 2190362 ~ 2191816 (-) True LOC120548872
XM_039785392.1 mRNA upstream 914826 2454273 ~ 2461461 (-) True LOC120548877
XR_005637492.1 other downstream 72058 1466728 ~ 1466845 (-) True LOC120550000
XR_005637619.1 other downstream 76429 1462356 ~ 1462474 (-) True LOC120550144
XR_005637484.1 other downstream 83008 1455777 ~ 1455895 (-) True LOC120549992
XR_005637698.1 other downstream 83231 1455554 ~ 1455672 (-) True LOC120550227
XR_005637684.1 other downstream 84775 1454010 ~ 1454128 (-) True LOC120550212
XR_005637648.1 other upstream 25867 1565314 ~ 1565432 (-) True LOC120550173
XR_005637603.1 other upstream 26741 1566188 ~ 1566305 (-) True LOC120550127
XR_005637654.1 other upstream 27409 1566856 ~ 1566974 (-) True LOC120550180
XR_005637699.1 other upstream 27632 1567079 ~ 1567197 (-) True LOC120550228
XR_005637692.1 other upstream 27855 1567302 ~ 1567419 (-) True LOC120550220

Expression Profile