RNA id: TU270498


Basic Information

Item Value
RNA id TU270498
length 1322
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G199511
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 2003697 ~ 2033513 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctgtaacttctgcatactttcacctatttaaaccattcaacttttcaaatgttcagctctttcagctaatgatgggacttcttcaactttttttctactatttatactttttaaaattttaagctttttaacacttttttttaacattaaagtcaatgagagcagggttcaactccttaaaatcttcttctgcttcaaaatgtatctcctcctacattcttccacctacacacgtaattcaaactttaaactgttcacaaaatattcagctatctggggtctacttttcaggttgatatattttacagtttttgtgaaaaatctgtttaagtttagtgattatttcatgaaattttatcgattaaacagggtgtgtattgcgtttgctagagtggatgacatcacagctagagggtgaagcttcgaaaaaattatcttagttccttgtctgtaaactgctctcacgcccacaatatctacttgtcatacacaatttatacatcaaaacgtaggtatttttgtctagtttcagaagatctgctcagttttgtgatacgccttttacttttggctggttgagcttccaaatgacaagatgtccaaatctttctccattggctccaatgttaaaactcgtggatatttcccagcgaaacactgaacgaaccacttttttaaatcgctgacatgcccacatttttatgtttatccatataaattttataccgatacgttcacaaaggccttgtgtctctaacggtcaagtcgctgttttgatagcatgtactgttgtggatttattaaggattgtttgaagggttctctcacactgtctctcactaatcAGGTGTGGGGATTAATGGTCCAAgagatgctttataaatactaaaggaacaatgtttgtctgttctgaagatggcgcagtggttatggcacatggctagggtgtgggtggcccgggttcaaatcccactgtggcatatcaatcagtgtgtccctggctaaggtgttatttgacttttcaactactctcactacttcaacttatttttacggttttaagctattcatccagtttagctttagcaattcagctattcatgttttattttgcaaacacacacatgcacacacgcaaacacacacacacatatacacacacacagacacacaaacagacacataaacacacacacacacaaacacacacacacaaagacagacacacatgcaaacacacacacaaacacacacacacaacacacacacactactcaaaaacacacacacacacacccccacccacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270493 lncRNA downstream 40012 1960531 ~ 1963685 (-) True G199509
TU270423 lncRNA downstream 232424 1770741 ~ 1771273 (-) True G199455
TU270419 lncRNA downstream 262365 1740899 ~ 1741332 (-) True G199451
TU270416 lncRNA downstream 305439 1698046 ~ 1698258 (-) True G199448
TU270390 lncRNA downstream 458189 1538903 ~ 1545508 (-) False LOC120548741
TU270511 lncRNA upstream 8058 2041571 ~ 2044733 (-) True G199522
TU270541 lncRNA upstream 63177 2096690 ~ 2105163 (-) True G199544
TU270547 lncRNA upstream 72577 2106090 ~ 2106365 (-) True G199550
TU270560 lncRNA upstream 115879 2149392 ~ 2149601 (-) True G199563
TU270563 lncRNA upstream 129204 2162717 ~ 2162933 (-) True G199566
XM_039785382.1 mRNA downstream 605731 1393347 ~ 1397966 (-) True LOC120548865
XM_039786655.1 mRNA downstream 803005 1200372 ~ 1200692 (-) True LOC120549623
XM_039785350.1 mRNA downstream 830075 1161680 ~ 1173622 (-) True LOC120548839
XM_039785379.1 mRNA downstream 1301791 698921 ~ 701906 (-) True LOC120548861
XM_039786586.1 mRNA downstream 1627310 375236 ~ 376387 (-) True LOC120549575
XM_039785020.1 mRNA upstream 28982 2062495 ~ 2093597 (-) False gphb5
XM_039785019.1 mRNA upstream 28982 2062495 ~ 2091939 (-) False gphb5
XM_039785021.1 mRNA upstream 39109 2072622 ~ 2091939 (-) True gphb5
XM_039785388.1 mRNA upstream 156849 2190362 ~ 2191816 (-) True LOC120548872
XM_039785392.1 mRNA upstream 420760 2454273 ~ 2461461 (-) True LOC120548877
XR_005637707.1 other downstream 176395 1827184 ~ 1827302 (-) True LOC120550236
XR_005637475.1 other downstream 301284 1702295 ~ 1702413 (-) True LOC120549983
XR_005637576.1 other downstream 301507 1702072 ~ 1702190 (-) True LOC120550099
XR_005637622.1 other downstream 301952 1701627 ~ 1701745 (-) True LOC120550147
XR_005637459.1 other downstream 302175 1701404 ~ 1701522 (-) True LOC120549966
XR_005637234.1 other upstream 39109 2072622 ~ 2073060 (-) False gphb5
TU270734 other upstream 840246 2873759 ~ 2947908 (-) False kcnh5b
TU270787 other upstream 1040264 3073777 ~ 3076312 (-) False wdr89
TU270791 other upstream 1044566 3078079 ~ 3078647 (-) False wdr89
TU270841 other upstream 1191344 3224857 ~ 3231655 (-) False snapc1b

Expression Profile