RNA id: TU277598


Basic Information

Item Value
RNA id TU277598
length 1857
RNA type TUCP
GC content 0.43
exon number 3
gene id LOC120549141
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 21752386 ~ 21757595 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACGTGTAGAGACCGTTGATCGTCATGTCTCTGCTGTAGCAAAGCTCCGTGCTagattttattatttgcctcCAGTTGTCGCTGCACTTTGTTTTGACAGctgcttgttttcttttctcgtACCTGTTTACCGAAGAATGAGCGAAAACGATGACATCGAAGTCGACAGCGATGCAGACAAGCGAGCCCATCACAATGCGCTTGAGCGCAAACGCAGGGACCACATTAAAGACAGCTTTCACGGTTTACGAGATTCCGTGCCTGCTTTACAAGGGGAGAAGGCTTCCCGAGCACAGATTCTAGACAAAGCCACCGAGTACATCCAGTACATGAGGCGAAAAAACCATACCCACCAGCAAGACATTGATGACTTAAAGAAGCAGAATGCACTGTTGGAGCAGCAGGGTAAGTGAAAGACTTGCACgtttttgttcttcttctttttacgATGAAGTGTGATGTAGTCTTTTAGTTGCAATATGCGATATATGATGAGATCTCCTGcagtctttgtctctctgtctgtgggtACTGCAGTTCGTGCACTGGAGAAGGCGAAGGGGAACACTCAGCTCCAGACAAACTACTCTTCTGACAGCAGCTTGTACACAAACCGCAAAGGCAGTGCGGTGTCCGCCTTTGACGGCGGGTCCGACTCCAGCTCTGAATCGGAGCCGGACGAGCCGCCCAACAGAAAGAAGTTGCGCGTGGAGCCCAGCTAGACTCGGGTCGCCCCCCTCTCCCCGGTTCTCCAAACAGACTTTTTGCCCACCAGCCCCAACTCCTCTCACCTGTCCACACTCAGTCCTGCATTCTAACGCCAGTCCAGAAGACAAGGAGGAGACTGTGTGAGAGAGGTGCTATTATGTATAAAACGCTTCTAccttccttttttctcctgGTAAGCATCCTGTCACTCCGTTCGTGGCCCAGCAACAACTTTTTAAGACCCCCAAAGTGAGGCAGCTCTGCAGTTTTGAAGGACtctatgcttattttttttttttaaacctcatGATAACCATTCATAATCAAATGTGGAGACAAGGTATGACGCTTTAGTAAAGCTACacaaaagatatagatttttctttttcttcactcATGGTTGTTTTGGACAACCTCTCTGCAATCTGTTGGGGTTGTGAGACTTTTTCGACCTTTGACAAAATGGTAATTAGGGATagtttacctttttaatattcATACTTTTCCAGAAAAGAATGTGAAGTTgcttttgaaaagaaaatgtctgTTATGCAAGATGCAACCCTCCTTATTCAGTGTAGGTGGCTGaagtttttgtctttgaaaATGTTTGTATAATCAAATGAATCCCTCTATTTATAGTGACTCGCCGAAATTGATTTCCTACCCCCATGTCTGGTCTCCCTTATGTTTGGCTAGAGATTTTCCAGAGAGCACAGGAGGATGAACAAGTTGACCTACTGTTTTAGTGGATTTTCCACAGGCTCAACTATTTATTTTCCTCTATTTTTATTATCAGATAAAATGTaggtatacaaaaaaaatccccTAATGGATACTGAATGTTAGGCAATGCAGTTAAAGGGCGGTGaccttttatttttgttaatgaAAGTCCATTTCAGTGTGTAGTAAATAACACTGTATACTCTTTAATGGTGTCAGTTCTGCAAAGAAAAGCCTTCCCTTGAAATATTTGCCTGTGCTGGGAacatttgtctttctttctttcttttctttttgcagagGTAAATTAGTGTGTATGTAATCAATATTTGTTTGTTCCATTCCATGGAAATTACAGGTATGTTGTACATACTGCCAACGGTTGTCTTGCAAGTTAAGGCAAACCTTTATTATGagactat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277554 lncRNA downstream 90664 21656220 ~ 21661753 (-) False LOC120549379
TU277536 lncRNA downstream 99158 21652889 ~ 21653259 (-) True G204946
TU277509 lncRNA downstream 146566 21604511 ~ 21605851 (-) True G204928
TU277508 lncRNA downstream 148921 21603155 ~ 21603496 (-) True G204927
TU277475 lncRNA downstream 188678 21563502 ~ 21563739 (-) True G204911
TU277716 lncRNA upstream 366439 22124016 ~ 22130595 (-) True G205068
TU277859 lncRNA upstream 593065 22350642 ~ 22351588 (-) True G205167
XR_005637290.1 lncRNA upstream 601252 22358829 ~ 22359857 (-) True LOC120548859
TU277865 lncRNA upstream 606906 22364483 ~ 22365818 (-) True G205173
TU277878 lncRNA upstream 665134 22422711 ~ 22424036 (-) True G205185
XM_039787007.1 mRNA downstream 819 21746045 ~ 21751598 (-) False LOC120549833
XM_039787006.1 mRNA downstream 1244 21746045 ~ 21751173 (-) True LOC120549833
XM_039787008.1 mRNA downstream 1296 21746045 ~ 21751121 (-) False LOC120549833
XM_039787009.1 mRNA downstream 6480 21743981 ~ 21745937 (-) True gpx2
XM_039785435.1 mRNA downstream 9937 21704793 ~ 21742480 (-) True LOC120548930
XM_039785802.1 mRNA upstream 15788 21773365 ~ 21780964 (-) False LOC120549144
XM_039785801.1 mRNA upstream 15788 21773365 ~ 21780956 (-) True LOC120549144
XM_039786345.1 mRNA upstream 71962 21829539 ~ 21838681 (-) True LOC120549428
XM_039785850.1 mRNA upstream 144708 21902285 ~ 21915732 (-) False acp7
XM_039785846.1 mRNA upstream 144708 21902285 ~ 21915732 (-) False acp7
TU277199 other downstream 899333 20852096 ~ 20853084 (-) True G204685
TU276123 other downstream 3567843 18182055 ~ 18184574 (-) True G203836
TU276045 other downstream 3668888 18081091 ~ 18083529 (-) False znf292a
XR_005637559.1 other downstream 3889206 17863129 ~ 17863211 (-) True LOC120550081
XR_005637560.1 other downstream 3889472 17862865 ~ 17862945 (-) True LOC120550082
TU277654 other upstream 173036 21930613 ~ 21931231 (-) False chrm5a
XR_005637366.1 other upstream 1020428 22778005 ~ 22783472 (-) False LOC120549283
TU278157 other upstream 1152530 22910107 ~ 22937857 (-) True G205380
TU278155 other upstream 1187360 22944937 ~ 22947793 (-) False LOC120549684
unassigned_transcript_1158 other upstream 1541210 23298787 ~ 23298860 (-) True trnai-aau_28

Expression Profile