RNA id: TU277916


Basic Information

Item Value
RNA id TU277916
length 774
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G205219
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22524966 ~ 22527086 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGAAACTTGATTACTTCTTTGGTGCTGACCTGAAATAGCAAGAAATGAGAATTAAGCATTAACAGCTTGTGAAAAACATTTCCAGCTAAATATCAGATCTGTTAgatcaaacaaaaacacaggaaacacagtAAGCTCACCACTGTGCTAATTTTCTTTTTGCCCTCAGATGCTCTGATGAGACATTTGTTGTCTGCtggttcaaatgactctgtgtgGCCCTTCCGGGGCGCTGGCTTGGTCCTCCCGTCATCTGGAAAGATAATTATCATCATTCCAGATAATTAGATGTTGAAAATGGGAAAGCAGCTTTACTTACGGACTAAAATTTTATGATGAATGTCAAAACTCAGGAGGGATCTGCTTACATTTCTTTAGCGTGATCACAACACTGCCAGATGTTCTGCACTTCTGGAACAGCCGTGTGAGCTCTGTGAGAAACTGGTCGAATCGTTTTCAAGAAGCACCATGATTCTGACTTCGGCTTTAGCGTTGGCTTACTGGCCCTAACTGCTGTGAAGCACACGTACTAGCTACACAAGCCGGAGCCCCGCCCTGCGCCTTCACTGCAGGAACAAGGCAAGCGTTAAGTCACAGGGCCGCCTATTGTCAGGGAGGGGAATACCACACAAAgatcccttcttcttcttcttcttcttttagttttttggCAGATTACTACTTTTGTATTATACCGCCACCAACTGTACAGGAGTGTATACCATGAACTTCATAGAAACGTCATAGAGTCTAGGCTTGAATTaattcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277908 lncRNA downstream 13561 22508455 ~ 22511405 (-) True G205212
TU277901 lncRNA downstream 31331 22493283 ~ 22493635 (-) True G205205
TU277869 lncRNA downstream 82626 22440740 ~ 22442340 (-) False zbtb42
TU277884 lncRNA downstream 88389 22427890 ~ 22436577 (-) True G205189
TU277880 lncRNA downstream 98335 22424657 ~ 22426631 (-) True G205186
TU277949 lncRNA upstream 108115 22635201 ~ 22635462 (-) True G205242
TU278042 lncRNA upstream 178631 22705717 ~ 22719412 (-) False G205297
TU278043 lncRNA upstream 178631 22705717 ~ 22706644 (-) True G205297
TU278044 lncRNA upstream 178779 22705865 ~ 22706644 (-) False G205297
XR_005637258.1 lncRNA upstream 361558 22888644 ~ 22895642 (-) False LOC120548708
XM_039786593.1 mRNA downstream 77023 22440729 ~ 22447943 (-) True zbtb42
XM_039785375.1 mRNA downstream 121992 22369484 ~ 22402974 (-) True dnajc17
XM_039786371.1 mRNA downstream 249110 22269836 ~ 22275856 (-) True LOC120549450
XM_039786372.1 mRNA downstream 249117 22267043 ~ 22275849 (-) False LOC120549450
XM_039786654.1 mRNA downstream 317023 22175303 ~ 22207943 (-) True crim1
XM_039786802.1 mRNA upstream 1446 22528532 ~ 22537515 (-) True xgb
XM_039786229.1 mRNA upstream 11103 22538189 ~ 22574490 (-) True LOC120549361
XM_039786231.1 mRNA upstream 11109 22538195 ~ 22574490 (-) False LOC120549361
XM_039786230.1 mRNA upstream 11109 22538195 ~ 22574490 (-) False LOC120549361
XM_039786232.1 mRNA upstream 11109 22538195 ~ 22550789 (-) False LOC120549361
TU277654 other downstream 593735 21930613 ~ 21931231 (-) False chrm5a
TU277598 other downstream 767389 21752417 ~ 21757577 (-) False LOC120549141
TU277199 other downstream 1671882 20852096 ~ 20853084 (-) True G204685
TU276123 other downstream 4340392 18182055 ~ 18184574 (-) True G203836
TU276045 other downstream 4441437 18081091 ~ 18083529 (-) False znf292a
XR_005637366.1 other upstream 250919 22778005 ~ 22783472 (-) False LOC120549283
TU278157 other upstream 383021 22910107 ~ 22937857 (-) True G205380
TU278155 other upstream 417851 22944937 ~ 22947793 (-) False LOC120549684
unassigned_transcript_1158 other upstream 771701 23298787 ~ 23298860 (-) True trnai-aau_28
unassigned_transcript_1159 other upstream 802083 23329169 ~ 23329242 (-) True trnai-aau_29

Expression Profile