RNA id: TU278567



Basic Information


Item Value
RNA id TU278567
length 911
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G205702
representative True

Chromosome Information


Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24475935 ~ 24476893 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gaaaaagtaaaaaaacaaataaattattttttatcatagTGCATATTATAATTAAACATAATCATAGAAAACTGCAACCGTGTGACATTGGGGAAAAAGTCTGCGCTTCACTTTCCCTACAGAAAGTAGGGAAATAGCAATAGTCCCTATTCTGTCCAGCTTTTATCAAAGCAGTCCCAAAAAGTAGCAAAGGTATTCTTCCATgcatatgaaaaaaatatatatatatatatatatgtttgaaaGAGTTATCATTCAACTATAATTGAAGCAAAGGAAACACTGAATATGCATGCTTTGGATACTGCATATCTTTATGAAGTTTAACAAAAAGCATTCCATTTTGTCACAAAGGTCAACATCTCATTTAAAGTAAAGATTAAACAGTTGCATGTAACTAATAGACAACTAATATATCATAAATGTGTGCATTTACATTAGTGGATTACATATTTTGTGCATAAATTCTCTTGCATGGCTttagcacgcacacacgcacgcatgcacaacaggatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactttggtttAATTTCACTGCAGCTCCTCGTCACTGTCGTCAACCTGTTGGATGATGAGGTCAGCCCCCGAGTCTTCAGCCAGGTCGTCGTCATCGGTTACCATCCAGCTCCTCTTGctgtccccctcctcctccccgtcCACTCCCAATAACAGGGCCGGTTCCTCACTAGCACCATCTAGACTGTCCATGGGGATCTCATCACAATCCACTTCCTGGATGCATGTGGTGCACATGCGGTAGCGTCGTGTGCCCTCACACACCACATGCCCAGTCTCCTCCGTCACCTGACACTTACACTTCCTGCACACCAGCTTCCTGGCTTGATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU278565 lncRNA downstream 29539 24443819 ~ 24446396 (-) True G205701
XR_005637307.1 lncRNA downstream 42102 24429974 ~ 24433833 (-) True LOC120549041
TU278492 lncRNA downstream 242826 24232642 ~ 24233109 (-) True G205643
XR_005637286.1 lncRNA downstream 278551 24186796 ~ 24197384 (-) True LOC120548836
TU278343 lncRNA downstream 765100 23707989 ~ 23710835 (-) True LOC120548654
XR_005637408.1 lncRNA upstream 41119 24518012 ~ 24518764 (-) True LOC120549591
TU278643 lncRNA upstream 92493 24569386 ~ 24571220 (-) False G205761
TU278638 lncRNA upstream 94394 24571287 ~ 24575939 (-) True G205761
TU278668 lncRNA upstream 121861 24598754 ~ 24600552 (-) True G205781
TU278660 lncRNA upstream 139233 24616126 ~ 24617454 (-) False runx3
XM_039785625.1 mRNA downstream 24658 24448440 ~ 24451277 (-) True insm1b
XM_039786267.1 mRNA downstream 213410 24237019 ~ 24262525 (-) True kiz
XM_039785331.1 mRNA downstream 344154 24127131 ~ 24131781 (-) True pax1a
XM_039785696.1 mRNA downstream 510175 23957775 ~ 23965760 (-) True LOC120549070
XM_039785984.1 mRNA downstream 520651 23920191 ~ 23955284 (-) True LOC120549247
XM_039785636.1 mRNA upstream 6020 24482913 ~ 24485855 (-) True gjb3
XM_039785639.1 mRNA upstream 12002 24488895 ~ 24491106 (-) False gjb10
XM_039785638.1 mRNA upstream 12002 24488895 ~ 24491105 (-) False gjb10
XM_039785637.1 mRNA upstream 12002 24488895 ~ 24491105 (-) True gjb10
XM_039785640.1 mRNA upstream 14732 24491625 ~ 24495581 (-) True ppie
TU278342 other downstream 765100 23707989 ~ 23710835 (-) False LOC120548654
unassigned_transcript_1159 other downstream 1146693 23329169 ~ 23329242 (-) True trnai-aau_29
unassigned_transcript_1158 other downstream 1177075 23298787 ~ 23298860 (-) True trnai-aau_28
TU278155 other downstream 1528142 22944937 ~ 22947793 (-) False LOC120549684
TU278157 other downstream 1538078 22910107 ~ 22937857 (-) True G205380
XR_005637356.1 other upstream 275523 24752416 ~ 24755421 (-) True rsrp1
TU278759 other upstream 372071 24848964 ~ 24876860 (-) False fndc5a
TU278771 other upstream 476313 24953206 ~ 24957041 (-) True G205845
TU278806 other upstream 595462 25072355 ~ 25074124 (-) True G205866
XR_005637425.1 other upstream 855997 25332890 ~ 25336666 (-) False LOC120549744

Expression Profile