RNA id: XM_039786271.1



Basic Information


Item Value
RNA id XM_039786271.1
length 551
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120549387
representative False

Chromosome Information


Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 30681927 ~ 30703278 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gacCTTTGCATAATCCACTTCCTCTTCACACTATCGCATCTTCTTCATTCGAGAGAAGACACCTCTTCACCGTAGCAGATAAACATGTCGGGGCTCCTGAGGACCATCGCCAGCCGTGCTGCTCCTGTGCTGCGGGGACACACAGTCACTCAGAGGGCAAATCTCTACGCTGGCCCGGCCAAGGAAAAGATCGGCACTGTTGAAACGATCATTGGACTGAGCATGTTCTCCCTGGCCATTCTGGGACCATCTGGATGGATCCTGGCCCACTTGGAGGACTACAAGAAGAAAGAATAATGTGGACATTTTAATAGTGTCATACCTCGTGCACCCATGTCTCCCGTCTTTGTTGACAACCTGGGACCATCATCATTATGTTCTGCTGCAGAGAAGAATATGGAACAAGTTTTACATTCACTCTTCTACCTCTCCGAAAGATTCACTCCACATCCCAACTGTTTCCAAACATAGACTCCTAATACATTGAAATTTGCATTGCAGATCTTCTCTCTTAAACAGTATGTTACAAGATTAAATTTTAAACCCAACTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005637393.1 lncRNA downstream 200631 30496770 ~ 30498292 (-) True LOC120549477
XR_005637326.1 lncRNA downstream 211418 30484785 ~ 30487505 (-) True LOC120549085
XR_005637232.1 lncRNA downstream 353517 30332529 ~ 30345406 (-) True LOC120548652
TU280250 lncRNA downstream 505213 30193173 ~ 30193710 (-) True G206966
TU280237 lncRNA downstream 600188 30097686 ~ 30098735 (-) False G206958
TU280430 lncRNA upstream 129266 30832543 ~ 30833569 (-) True G207104
TU280480 lncRNA upstream 165367 30868644 ~ 30942703 (-) True G207145
TU280532 lncRNA upstream 331519 31034796 ~ 31035354 (-) True G207175
TU280566 lncRNA upstream 472035 31175312 ~ 31177564 (-) True G207203
TU280567 lncRNA upstream 484098 31187375 ~ 31187646 (-) True G207204
XM_039787095.1 mRNA downstream 1677 30689978 ~ 30697246 (-) True LOC120549895
XM_039787094.1 mRNA downstream 1677 30689981 ~ 30697246 (-) False LOC120549895
XM_039786424.1 mRNA downstream 127171 30500242 ~ 30571752 (-) False gabrb1
XM_039786425.1 mRNA downstream 141145 30500242 ~ 30557778 (-) True gabrb1
XM_039786426.1 mRNA downstream 160833 30500242 ~ 30538090 (-) False gabrb1
XM_039786273.1 mRNA upstream 11526 30714803 ~ 30743702 (-) True LOC120549389
XM_039785179.1 mRNA upstream 46954 30750231 ~ 30760842 (-) False lrit3b
XM_039785178.1 mRNA upstream 46954 30750231 ~ 30760842 (-) True lrit3b
XM_039785175.1 mRNA upstream 74527 30777804 ~ 30787857 (-) True LOC120548738
XM_039786858.1 mRNA upstream 227859 30931136 ~ 30939403 (-) True LOC120549749
TU280189 other downstream 764357 29934262 ~ 29934566 (-) True G206919
TU279699 other downstream 2494833 28054405 ~ 28204090 (-) False LOC120549715
TU279676 other downstream 2664171 28012039 ~ 28034752 (-) True LOC120549840
TU279261 other downstream 3873859 26821688 ~ 26825064 (-) True G206198
XR_005637426.1 other downstream 5362261 25332890 ~ 25336662 (-) True LOC120549744
TU280565 other upstream 479746 31183023 ~ 31183555 (-) True G207202
TU280713 other upstream 1272541 31975818 ~ 31979760 (-) True G207327
TU281180 other upstream 1906258 32609535 ~ 32691885 (-) True G207670
TU281218 other upstream 1970677 32673954 ~ 32681855 (-) False LOC120549602
TU281264 other upstream 2159510 32862787 ~ 32885141 (-) False LOC120548944

Expression Profile