RNA id: XM_039785448.1


Basic Information

Item Value
RNA id XM_039785448.1
length 2720
RNA type mRNA
GC content 0.58
exon number 6
gene id LOC120548944
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 32859559 ~ 32932010 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTTGTGCTGCCAGGTGTCACCTGTCCTGCAGCGCCCTACTACCCTGCAGTGCTCGGCTCGCGCCCTGCTAACGTGCCCCTACACCCTGCCCGCTCCTACTACGCCTGCAGTGCCCTGTTACgcccctgctacgtcctgctacaccctgctacgtcctacACACCTCCGCTgctcctgctacaccctgcaacgtcctgctacacccctGCAACGTCCTGCGGCCTCTACTACCCCTGCAGTGCTCCGCACtgcctgctactgataAATAAGGGTCAGTGTGTGTCGAAGTACTACCGGTGGATCCAGAAGAACAGCGGTTACATCTGGATCCAGTCGAGCGCCACCATCGCCATCAACGCCAAGAACGCCAACGAGAAGAACGTCATCTGGGTCAACTACGTCCTCAGTAACCACGAGTATAAGGACACGCCCATGGACATCGCCCAGCTGCCCAACCTGCCGGAGAAAACCTCAGAGTCCTCCGAAACCTCAGACTCCGAGTCCGAGTCCAAAGAAAACTCCGATAATGAGAATGCCAAGTCCGAGGGGAAACCGGGCCACCAATCAGAACGCGAGGACCCGGAGACGGACAGCAAGCGTCAACAACAGCCCGGCCAACCACATTGCTCCTCCGAACAGGAAATGAAGCGACAGGAGGAAGGAGACAGCTCGAGTAACCCAGAGAGCCAGGACAGTGACGATAGTCTGGAGCCTTCGGATGCAGAGGGGGAGGAacaggaggaggcaggaggaggaggaggaggaggaggaggaggaggaggaggaggaaggctgGGGAGGTTAGCAGGACTGGGAGGGTTGGGCGCTTTGGGCGCCATCGGAGGACTCGATAATCTGGGCGGGCTTCACATTAAAGTAGAGCACTATGGCGACGGAGAAGAGGTTCAGCTGCACAACTCGCAAAGTTCTTCatcggaggaggaggaggaagaggaggatgaccaggaggaggaggaggaggaggaagacgtAGGCGTGCAAGATTGTGACAGCGCCAACGCCGGAAGCAAGCTCCAGAAGAGGCGAAAGAGGAGGAAAGTGCAGAAATGGGACGGATCCCGAAGCAGGAGGATCCGTCTTTCCTCGACCTCGCCGAGCCCAGTCGCCATGGGAGACGCCGCGGCGCCGCTGGTCGACCCCTCCCAAGCCGCTCCCGCGAACTCCTCCCACCTGCTCGCCACGGGCTCCTCCCCCCCGAACGGCGCAGCGGCCGCCACGTCCTCGGTGTTGAAAATCAAGACGGAGATGGCGGAGCCCATCAACTTTGACAACGACAGCAGCATCTGGAACTTCCCGCCCAACCGAGAGATCTCCCGAAACGAGTCGCCGTACAGCATGACCACGAAGCCCGGCGGCGCGCCGGGAGGCCACGAGAACTTCCCCTCACCACAGGGCGGCTCGCTCCAAGTGGCCATCCCCGACTCAGTCCTGACCCCGCCAGGAAccgagggaggaggaggaggaggaggaggaggaggtgcgaGGAAGCCTCCTCCTTACAACGGAAACTCAGCGCTTTCTTCCGCTTCCAACGGCGCCAGTTTGGCGCTTCCCTCCAGCGGCGCCTCGTCAGCAGACCCTCTGTCCCCTCCGCTGTCCGCCTCGCCGCGGGACAAACAACAAGGCACTCCCAcaacctcttcctcctcctcctcctcctcctcttcctcatcctcatcgacctcttcctcctcttcgctGCTGTACTCCGGCGATCTGGAGGCTCTGCAGCGTCTCCAGGCCGGTAACGTCGTGCTCCCGTTGGTGCACCGGGTCACGGGGACTCTGGCGTCCACCGGCACGACCTCTCCGCGGGTCTACACCACCGGGACCATCAGGTACGCGCCGGCAGACGTCACTCTGGCCATGGCGCAAGGCAACCTGCTCCCGAACGCCGCCATGAACTTCGTGGACAGCTCCGGGTTCGGCCTGGACCCCAAGACGCCGATGGAGATGCTGTACCACCACGTTCACCGGCTCAACATGTCGGCCGCGGCGGCCGCCGGTCCGTTCGTCGGGTCTCCGGCGGCCGGAGCGGGCGGGAACGGCGCCCTGGGAGGCCAGATGGCGAGCGCGGCCAACGTTTTCACCACGGCGGAGGGACTTTTTTCCACGCTACCGTTCCCGGTGTACAGCAACGGGATCCACGCCACGCAGACGACGCTGGAACGGAAGGAGGATTAACGCAAAGCGCTCAAGACCGCAttactgtgtttgtttttttttccggaACCAACGAACTGTGTCAGATTTAACTAAGACTTCAACTCGCTCGTGAAAATAAAAacgaaaaaagagaaataaaacaaagactattttatcttctttttaTCAACACagcactgtgtgttttttttttttttttcgagagGGGAGAAAGGACAGGAAAGGACGACATATGTACTCTAGCACTTTGAATCTGAGCAACTGAGCTTGTGTAATAGACATGAATGACCCTCAAACATgtccacgccccctttttaatctatcttttttcctctctctctcctcctcctcatcctcctcttctctgcctctctgtctctctctttctctctctctctctctctctttttgctcCTGTTTCTTGCGATCAGCAACAGTTTTTCTCTCGGATCAAAATGAACAAcaggacacaaaaaaaacaactattctTTAATGTGAAGaaatccattttttattttttttttggccta

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281208 lncRNA downstream 11647 32845885 ~ 32847912 (-) False G207685
TU281209 lncRNA downstream 12910 32845885 ~ 32846649 (-) True G207685
TU281213 lncRNA downstream 38278 32758197 ~ 32821281 (-) True G207687
TU281207 lncRNA downstream 42166 32790869 ~ 32817393 (-) True G207684
TU281229 lncRNA downstream 56735 32749130 ~ 32802824 (-) False G207698
TU281283 lncRNA upstream 26685 32958695 ~ 32982724 (-) False G207728
TU281270 lncRNA upstream 47867 32979877 ~ 33038026 (-) True G207728
TU281301 lncRNA upstream 129969 33061979 ~ 33542901 (-) True G207739
TU281302 lncRNA upstream 132660 33064670 ~ 33080983 (-) True G207740
TU281305 lncRNA upstream 162175 33094185 ~ 33149293 (-) False G207742
XM_039786993.1 mRNA downstream 168646 32687730 ~ 32690913 (-) True LOC120549825
XM_039786621.1 mRNA downstream 177657 32673953 ~ 32681902 (-) True LOC120549602
XM_039786798.1 mRNA downstream 1882601 30971115 ~ 30976958 (-) False LOC120549706
XM_039786799.1 mRNA downstream 1885126 30971115 ~ 30974433 (-) True LOC120549706
XM_039786797.1 mRNA downstream 1891479 30961020 ~ 30968080 (-) False LOC120549705
XM_039785449.1 mRNA upstream 29268 32961278 ~ 32964049 (-) True LOC120548945
XM_039785450.1 mRNA upstream 62348 32994358 ~ 33078319 (-) True prkd1
XM_039785015.1 mRNA upstream 371741 33303751 ~ 33305439 (-) True foxg1a
XM_039785451.1 mRNA upstream 391597 33323607 ~ 33460847 (-) True sptbn5
XM_039785993.1 mRNA upstream 576598 33508608 ~ 33524752 (-) True LOC120549249
TU281180 other downstream 167674 32609535 ~ 32691885 (-) True G207670
TU281218 other downstream 177704 32673954 ~ 32681855 (-) False LOC120549602
TU280713 other downstream 879799 31975818 ~ 31979760 (-) True G207327
TU280565 other downstream 1676004 31183023 ~ 31183555 (-) True G207202
TU280379 other downstream 2156281 30681927 ~ 30703278 (-) False LOC120549387
TU281288 other upstream 62402 32994412 ~ 33012240 (-) False prkd1
TU281303 other upstream 138251 33070261 ~ 33070727 (-) True G207741
TU281304 other upstream 186878 33118888 ~ 33149293 (-) False G207742
TU281307 other upstream 186878 33118888 ~ 33149293 (-) False G207742
TU281306 other upstream 216136 33148146 ~ 33149293 (-) True G207742

Expression Profile