RNA id: XM_039785994.1


Basic Information

Item Value
RNA id XM_039785994.1
length 1942
RNA type mRNA
GC content 0.57
exon number 7
gene id ehd4
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 33532487 ~ 33647324 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaaaaaaacacacagaggaggCAGTGTGTTCAGAGCAGGAGAGACTCCCAGGTGtcaaacacgcacacgcacgctcGCTCAGTGTGAAGGACGAACTGCGCGAGAAGGAGACGAAAACAACCGGAACATTTGGAAATATCGAAACAGGGAAGTTGGAATCGAGCGTGTCGGTGTCAGCGGTGGAGAAGTGCCGTCGGCAGCATGTTCAGCTGGGTCAAACAGGAGCAAGGTGGACGCAACAAGGAAGGAGAGATGTACCAGACGGTGACGGAGGGTCTCCAGAGCCTCTACCTCAAGAAGCTGCTGCCGCTGGAGGAGACCTACCTCTTCCATGACTTCCACTCCCCGGCCCTGGAGGCGGCCGACTTCCAGAGCAAGCCCATGGTGCTGCTGGTCGGCCAGTACTCCACCGGGAAAACCACCTTCATCAGgtttaTCTGCTCTCAGATGCCCAATCAGGTTCTTCAGAGCATCAGCATCATCGACACGCCCGGTATCCTGTCAGGAGAGAAGCAACGGATCAGCAGagGCTACGACTTTGCGGAGGTCCTGCGTTGGTTCGGCGAGCGGGTGGATCGGATCATTCTGCTGTTCGACGCTCACAAACTGGACATCTCAGACGAGTTCTCCGAAGCCATCCGAGCCTTCAAAGGCCAAGATGACAAGATCAGAGTGGTGCTCAACAAGGCCGACCAGGTGGACACGCAGCAGCTGATGCGGGTGTACGGCGCCCTCATGTGGTCGCTGGGGAAAGTGATCAACACGCCCGAGGTGGTGAGAGTTTATCTGGGCTCCTTCTGGGCCAAACCCCTGCAGAACTCCGAGAACAGGCGTCTGTTTGAGGCGGAGTCTCAGGACCTGTTCAAGGACATCCAGAGTCTCCCGAGAAACGCAGCGCTGCGTAAACTCAACGACCTCATCAAGAGAGCGAGGCTGGCCAAGGTGCAGGCGTACATCATCAGCTACCTGAAGAAGGAGATGCCGTCTCTGTTCGGgcgggagaagaagaaggaggagctGATCATGAGGCTGCCGGAGATCTACACCATCCTGCAGAGAGAGCACCACATCAGCCCCGGAGACTTCCCCAGCGTCACCAAGATGCAGGACATGTTGCAGCACTACGACTTCAGCAAGTTCCCGTCTCTGAAGGTGAAGCTGGTCGAGTCGGTGGACAAGATGTTGGCCACGAAGATCGCCGGTCTGATGTCGATGATCCGCGACGAAGAGTCCAAGCTGCCGCCGCCGATGGTGTCCGGCGGCGCCTTCGAGGGCTCCCAGGACGGGCCCTTCGGCCACGGCTACGGCGAGGGCATCAGCGCCGGCGCCGACGCCGAGGATTGGATAATCGGCCGCGAGAAGCACCGCTACGACGAGATCTTCTACATGCTGATGCCCATCAACGGCAAGATCACCGGGGTCAACGCCAAGAAGGAGATGATGAACTCGCGGCTGCCCAACACCGTGCTCGGCAAGATCTGGAAGCTGGCCGACTGCGACAAGGACGGCATGCTGGACGACGAGGAGTTCGCCCTGGCGCAGCATCTCATCAAGATCAAACTGGAGGGATACGAGCTGCCGGCCGAGCTGCCCGAGCACCTGGTGCCCCCGTCCCACCGCAAAAACCCCACCGCCGACGCCATGTACAACCACAGCGAGGACTAGGGGGGGGCGGCAGCCGCCAAAGTTGGCGCCGTTTACcggccaaatgctggtgaaatgtGCAGGTGGCTGGTAGGGTTGGTAGGGGTGTAAATCACAAGTTTTATCACGATACCATCAGTCGATTCTATGGACAACGATACCATATTTGAGGATATATTTAAAGCCCATttaaatcagacacacacacacacacacatgcagacacacacacacacacacatgcagacacacacacacacacacacacacatgcagacacacacacacacacatgca

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281394 lncRNA downstream 44067 33478983 ~ 33488420 (-) True G207794
TU281373 lncRNA downstream 85528 33366397 ~ 33446959 (-) False G207776
TU281368 lncRNA downstream 86518 33444269 ~ 33445969 (-) True G207776
TU281367 lncRNA downstream 86518 33445555 ~ 33445969 (-) False G207776
TU281388 lncRNA downstream 96844 33435219 ~ 33435643 (-) True G207788
TU281404 lncRNA upstream 65240 33646701 ~ 33683064 (-) True G207801
TU281395 lncRNA upstream 93452 33674913 ~ 33679837 (-) False scfd1
TU281425 lncRNA upstream 104111 33685572 ~ 33686916 (-) True G207817
TU281429 lncRNA upstream 117715 33699176 ~ 33702742 (-) False scfd1
TU281455 lncRNA upstream 123519 33704980 ~ 33705588 (-) True G207824
XM_039785993.1 mRNA downstream 7735 33508608 ~ 33524752 (-) True LOC120549249
XM_039785451.1 mRNA downstream 71640 33323607 ~ 33460847 (-) True sptbn5
XM_039785015.1 mRNA downstream 227048 33303751 ~ 33305439 (-) True foxg1a
XM_039785450.1 mRNA downstream 454168 32994358 ~ 33078319 (-) True prkd1
XM_039785449.1 mRNA downstream 568438 32961278 ~ 32964049 (-) True LOC120548945
XM_039785129.1 mRNA upstream 12607 33594068 ~ 33623644 (-) True coch
XM_039785452.1 mRNA upstream 51518 33632979 ~ 33702514 (-) True scfd1
XM_039785094.1 mRNA upstream 128402 33709863 ~ 33731941 (-) True g2e3
XM_039785454.1 mRNA upstream 190878 33772339 ~ 33818299 (-) False strn3
XM_039785456.1 mRNA upstream 249726 33831187 ~ 33904023 (-) True hectd1
TU281405 other downstream 33955 33491573 ~ 33498532 (-) True G207802
TU281304 other downstream 383194 33118888 ~ 33149293 (-) False G207742
TU281307 other downstream 383194 33118888 ~ 33149293 (-) False G207742
TU281306 other downstream 383194 33148146 ~ 33149293 (-) True G207742
TU281303 other downstream 461760 33070261 ~ 33070727 (-) True G207741
TU281464 other upstream 138024 33719485 ~ 33731941 (-) False g2e3
TU281431 other upstream 190916 33772377 ~ 33846497 (-) False strn3
TU281435 other upstream 190916 33772377 ~ 33884726 (-) False strn3
TU281436 other upstream 190916 33772377 ~ 33846497 (-) False strn3
TU281439 other upstream 190916 33772377 ~ 33777317 (-) False strn3

Expression Profile