RNA id: XM_039785015.1


Basic Information

Item Value
RNA id XM_039785015.1
length 1689
RNA type mRNA
GC content 0.59
exon number 1
gene id foxg1a
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 33303751 ~ 33305439 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGAAAAGGTCCAACCAATGTTTTTTTACTTGCTTTAGTGGCTGTGGCTCCCTAATTAATTGCAGCTATCTGTCTCCTatcgatgtgtgtgtgtacatgtgtgttgtgtgtgtgtgtttcctcttttctccccAAACCGAACATGAAATAGTTTGTTGGGCTATAGTTTCTTTCTTCCTATCGTccccccttccttccttccttccttcccgtCCGGGCTCGCAGGCAGAGACAGGACAGATTGAAACCCAGCTGTGTGCGTTGCCATTTTCCCCCCTCTCTGCTCGGTGATGTTGGATATGGGAGAGCGCAAAGAGGTGAAAATGATTCCTAAATCGTCGTTCAGTATAAACAGTTTGGTGCCCGAGGCCGTGCAaagcgacaacaacaacaacagcaacagcagcagccaccagaaccaccaccaccaccaccaccagaaCCACCACATCCAGAGCCACATCCAGAACCACCGGGCCGTCGGCGCCGAGGAAGCCGAGCGCAAAGCTCCTCTCCCGGTCGCGCAGCAGCCGCAGAGTGAGGCCAAAGCGGATTCTAAAAGTGAGTCCGCGAGCCTGCAGGAGGAGAGCTGCGCGGACGAGAAAGACAAaccggaggagaagaaggacgGGAAAGACGGGGACGGAGGAAAGGACGGAGAGAAGAAGAGCGGCAAGTACGAAAAACCTCCTTTTAGCTACAACGCGCTGATCATGATGGCCATCCGGCAGAGCCCGGAGAAACGGCTCACACTCAACGGCATCTACGAGTTCATCATGAAAAACTTCCCGTACTACCGGGAGAACAAGCAGGGCTGGCAGAACTCCATCCGGCACAACCTCAGCTTGAATAAATGCTTCGTGAAGGTGCCCCGGCACTACGACGACCCGGGCAAAGGGAACTACTGGATGCTGGACCCGAGCAGCGACGACGTCTTCATCGGAGGCACCACCGGGAAGCTGCGGCGGCGCTCCACCACGTCCCGGGCCAAGCTGGCCTTCAAGCGGGGCGCGCGCCTCACCTCCGGGCTCACCTTCATGGACCGCGCCGGCTCCCTGTACTGGCCTATGTCGCCCTTCCTGTCGCTGCATCACCCGCGAGCCAGCGGCGCCCTGGGCTACAACGGGACCTCCTCCGGCTACCCGGCGCACCCCATGTCCTACAGCACCATGCTGACGCAGAACATGGGCAGCAACCACTCGTCGTTCCCGGGCTCCAACGGGCTGAGCATGGATCGGCTGGTCGGCGGGGATCTGCCCTACGCCACGCACCACCTGACGGCGGCGGCCCTGGCGGCCTCCGCGGTGCCCTGTGGCCTCTCCGTGCCGTGCTCCGGGGCCACTTACTCCCTGAACCCGTGCTCTGTGAACCTGCTGGCCGGGCAGACCAGTTACTTTTTCCCTCACGTCCCACACCCCTCCATGAGCACGCAGTCCGGCGGCGGATCCTTGCAGGCAGCCCGGGCTTCGGCCTCCAATTCCCCGCAGGCTCCGTCCTCGTCCTCGCTGCCCTGTGACTCTCTGAGGCCGGCTCTGTCCGGCTCTCTGCCGGCCTTCTCCTCGGGACTTTCCGGGGGTTTGTCTGACTATTTTACGCATCAAAACCAGGGCTCGACCTCCAACCCGCTTATACACTAACCTCACCCTCACCTATTCATTCATCCCTCCATCTATCCATGCTCCCCTTTA

Function

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09385 FOXG; forkhead box protein G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281334 lncRNA downstream 19004 33196434 ~ 33284747 (-) True G207755
TU281333 lncRNA downstream 19004 33225832 ~ 33284747 (-) False G207755
TU281319 lncRNA downstream 49088 33192789 ~ 33254663 (-) False G207747
TU281336 lncRNA downstream 49545 33208295 ~ 33254206 (-) True G207756
TU281322 lncRNA downstream 85247 33150281 ~ 33218504 (-) False G207747
TU281353 lncRNA upstream 8163 33313602 ~ 33314976 (-) True G207766
TU281355 lncRNA upstream 13513 33318952 ~ 33362302 (-) True G207767
TU281356 lncRNA upstream 15345 33320784 ~ 33323023 (-) True G207768
TU281373 lncRNA upstream 60958 33366397 ~ 33446959 (-) False G207776
TU281375 lncRNA upstream 61619 33367058 ~ 33375800 (-) True G207778
XM_039785450.1 mRNA downstream 225432 32994358 ~ 33078319 (-) True prkd1
XM_039785449.1 mRNA downstream 339702 32961278 ~ 32964049 (-) True LOC120548945
XM_039785448.1 mRNA downstream 371741 32859559 ~ 32932010 (-) True LOC120548944
XM_039786993.1 mRNA downstream 612838 32687730 ~ 32690913 (-) True LOC120549825
XM_039786621.1 mRNA downstream 621849 32673953 ~ 32681902 (-) True LOC120549602
XM_039785451.1 mRNA upstream 18168 33323607 ~ 33460847 (-) True sptbn5
XM_039785993.1 mRNA upstream 203169 33508608 ~ 33524752 (-) True LOC120549249
XM_039785994.1 mRNA upstream 227048 33532487 ~ 33581461 (-) True ehd4
XM_039785129.1 mRNA upstream 288629 33594068 ~ 33623644 (-) True coch
XM_039785452.1 mRNA upstream 327540 33632979 ~ 33702514 (-) True scfd1
TU281304 other downstream 154458 33118888 ~ 33149293 (-) False G207742
TU281307 other downstream 154458 33118888 ~ 33149293 (-) False G207742
TU281306 other downstream 154458 33148146 ~ 33149293 (-) True G207742
TU281303 other downstream 233024 33070261 ~ 33070727 (-) True G207741
TU281288 other downstream 291511 32994412 ~ 33012240 (-) False prkd1
TU281405 other upstream 186134 33491573 ~ 33498532 (-) True G207802
TU281412 other upstream 228038 33533477 ~ 33611751 (-) True G207808
TU281419 other upstream 275585 33581024 ~ 33647324 (-) False ehd4
TU281464 other upstream 414046 33719485 ~ 33731941 (-) False g2e3
TU281431 other upstream 466938 33772377 ~ 33846497 (-) False strn3

Expression Profile