RNA id: XM_039785327.1


Basic Information

Item Value
RNA id XM_039785327.1
length 1598
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC120548822
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22794601 ~ 22799993 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAACAAGCAGTGGATCTTTATTAGACCAGAGACTGTCATTGATCGGCATAAACTGAACCTAGTGTCTGAGCACCATGCTATAGTCAAGCAGTCATTTGCTGTTGGAGACAGACAACCTGCAGAGCTGTCCTTAAAGTTTAAAGCAAACCGTGTTCACAGCTGTCTGGACTGTCATCTCCAAACAAACTTGTGTCTTAGAAGACTATGGACAATCAAACATCAACATTGAATGGGAAAAACATGGCATCTAGGATGGAGGACTCACACATGGGACTTGTCGAGGATGTCACAGACGGCAGCCATACTGACTCTGAAACAGAGACGATCATGCCCCTAGATGAGTGTACATCACATCCCATACTACAAATGGACCAGGCGGTAATGGACAACGTGGGGCAGCTTTTCGACCACTGCATCCAGCAGGTGTCCCATCTGGAGACACAGAGGAACGAGCTGATACAAGAGCTCCTCCGTCTGCAGGAACCCATTCTGCGAGTTGTGGGGCACCTGAGAGGGAAGCTGCTAGAGACACAGAGGCTGCTCACGCTGGCTCAGATGGATTATGTCGCTGTTTATGAGGAAGTGAAGGAGGTGAAGAGGAAACTTTTTGCCACAGCCAGAGACTGCATCCAGAGCCAGGTGACGCTGGCTGAACAGGAGTACGAGGTGGCTCAGTCTGCTGTGACACAGGAGGAGCTCAAAGCCCACATCCAAAGTCTGATCCAGGAGTTGTCCGAGCTCCAGGAGGCCCAGCAGAAGCAGCTGAACACCCTGAGGGACCAGGCCTCTAAACCCTGCAGGCCCAGGGCCACGAGTGACGTCAGCCAGTGCCGACAGGCGTCGGTCAGGCTGCAACGGCGGCTCAGTGGCAGTGTGAGGGCGCTGGAGGGCTGGTATGAGCCTCGGCTCATGGCCCTGCTGAAGAGAAGGCAGGTTGGATTGGACGCCTTGAGAAAGAGCAGGGAGCAGGCTATGGACCTGAAAGCCAGGCTGGGGCCCCTGAGAGAGGATATACAGAGGCTAGAGGTGCAGAGAGCCTGCCTGGTGCAGAGGGTCACtctgatggagagagagagggaggagggcatCACACAACACAAGGAGACTGTGGAGAAACTAAAAGAGACTTTGAAAGAACTGGAAGTGGAGTTTGCGGTTCAAAGAACATCTAAGAAAGATTTGGAGGATCGTAATGACGGCCTTCGAAAAGAGCTGACATTTCTCAGAGGCTGTGATGAACCCAGTGAAACCATGGAAGAGGATCCCTAATTTTCTGTTTTCAGTAGATATTAAGCCTATTATCTACACCAGACCAAACCATGGTATAGGATTTACATTTAATATAGAAAAGCTCATTATATGCAgcatcatttttttttgcttcaatAGAATTAACTCTTACCTACAACTTATCTGGCACACTGTGCCAGGAAGCAAAGCAAAAAgatttactgtaaatattttattatgaaTATTCTTAAGTACGCAAGAGATCAGATGCAGCACAGAAGAACGcatagaagaaaagaaaaaaaaacacatacaagtGACAAACGCAATCTGGAAAATTCATACTATGAATATCAAGcaaatacaa

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K10377 SYNC1; syncoilin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278042 lncRNA downstream 75189 22705717 ~ 22719412 (-) False G205297
TU278043 lncRNA downstream 87957 22705717 ~ 22706644 (-) True G205297
TU278044 lncRNA downstream 87957 22705865 ~ 22706644 (-) False G205297
TU277949 lncRNA downstream 159139 22635201 ~ 22635462 (-) True G205242
TU277916 lncRNA downstream 267515 22524966 ~ 22527086 (-) True G205219
XR_005637258.1 lncRNA upstream 88651 22888644 ~ 22895642 (-) False LOC120548708
XR_005637259.1 lncRNA upstream 88651 22888644 ~ 22895400 (-) True LOC120548708
XR_005637417.1 lncRNA upstream 109979 22909972 ~ 22920458 (-) True LOC120549686
TU278158 lncRNA upstream 110114 22910107 ~ 22930112 (-) False G205380
XR_005637418.1 lncRNA upstream 150234 22950227 ~ 22951060 (-) True LOC120549687
XM_039785328.1 mRNA downstream 6018 22785485 ~ 22788583 (-) True zbtb8os
XM_039786089.1 mRNA downstream 11129 22779013 ~ 22783472 (-) True LOC120549283
XM_039786088.1 mRNA downstream 17657 22772888 ~ 22776944 (-) True tmem39b
XM_039786087.1 mRNA downstream 22539 22764845 ~ 22772062 (-) False ccdc28b
XM_039786086.1 mRNA downstream 22539 22764845 ~ 22772062 (-) True ccdc28b
XM_039785322.1 mRNA upstream 32809 22832802 ~ 22835500 (-) True LOC120548820
XM_039785436.1 mRNA upstream 42596 22842589 ~ 22846393 (-) True si:ch211-67f13.7
XM_039786779.1 mRNA upstream 48791 22848784 ~ 22862634 (-) True LOC120549695
XM_039786763.1 mRNA upstream 124884 22924877 ~ 22935375 (-) True LOC120549682
XM_039786765.1 mRNA upstream 127965 22927958 ~ 22933497 (-) False LOC120549683
XR_005637366.1 other downstream 11129 22778005 ~ 22783472 (-) False LOC120549283
TU277654 other downstream 863370 21930613 ~ 21931231 (-) False chrm5a
TU277598 other downstream 1037024 21752417 ~ 21757577 (-) False LOC120549141
TU277199 other downstream 1941517 20852096 ~ 20853084 (-) True G204685
TU276123 other downstream 4610027 18182055 ~ 18184574 (-) True G203836
TU278157 other upstream 110114 22910107 ~ 22937857 (-) True G205380
TU278155 other upstream 144944 22944937 ~ 22947793 (-) False LOC120549684
unassigned_transcript_1158 other upstream 498794 23298787 ~ 23298860 (-) True trnai-aau_28
unassigned_transcript_1159 other upstream 529176 23329169 ~ 23329242 (-) True trnai-aau_29
TU278342 other upstream 907996 23707989 ~ 23710835 (-) False LOC120548654

Expression Profile