RNA id: XR_005637366.1


Basic Information

Item Value
RNA id XR_005637366.1
length 1666
RNA type transcript
GC content 0.51
exon number 11
gene id LOC120549283
representative False

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22778005 ~ 22783472 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTCCCAATCACACTGAAATGCAGCTGCGCCATTCCTCCTTTGTCCAGAGAAGAGAGCAAAGCGACCTGCAACAGAAAGATACCGGGGCCTTTGCAACGTTACCGTTTCTTGCGCCGCAGTCGGAAACAACGTTAGCTACTTAATTGCAGTTTAGTTTAAGGCGAAGCTGACGAACCTAGCAAGGCTTCGTTCGTTATTCTGGCCGTGCTAGTACGGTTATGAGCAATTCTGAGTCCGCCATAGAGTCAAGCCCGCAGAAGAAAATCAAAATGGAAGACACTAAATACCTGCCGGAGCTCCTGGCTGAAAAAGACAGCTTGGACTCGTCTTTCACGCACGCCATGAAACTTATTTctgcagAAATCGAGAGGATTCAAAAAGGTGACACCAAGAAAGAGCCAGAGAAGGAAACGTATCTGGACCTGTTTGCTACCAAGAACCTTAAACTGAAAGAGCGGGTACTTATTCCTACCAAGCAGTACCCTAGGGTCAACTTTGTTGGTAAGCTTTTGGGACCTCAAGGCAGCACAATCAAGAGGCTCCAGGAAGAGACGGGTGCAAAGATTTCAGTCCTGGGTAAAGGTTCCATGAGAGACAAGAATAAGGAGGAAGAGCTGAGGAAAGGCGGTGAGGCCAAATATGCACACCTTGCCATGGAGCTGCATGTGTTCATTGAGGTGATGGCACCCATACCAGAAGCCTATATGCGTATGGCGCATGCCATGGAGGAGGTCAAGAAGTTTCTTATCCCAGAACCTGGTGAGCATGACCCGTACATGGATCCTCATTTCCTGAATGGGTCCCAGGATGGTTCAGGCAGGGGACGAGGTGGGCACTTAGGAAGGGGCAGAGGTGGACCACCAGGTGCTGGAGGACCACGGGGGCGAGGGATGCCACGTGGGGCCCCCCGAGGAGCAATGCGTGGTGGCGGTCCACGGGGAGGATTAGGCCGGGGCAATGGTCCTAGAGGTGCACCATCTGGTAGGGGGGGGCCACCTTCTGCTCCCAATAGAGGAGGCTCGGCTTCCCGCTCTAGACCCCCTGCAGCAGGGGGTCAAAGGATGCTCCCCTCTGCAGCCATGTCTCACCAGCAACACCAGGGTCCTCCCTCAGCATCACAGCCCAAATCTGATGGCTATGAGGACTATTCTCAATATGAAGAATCCTATGCAGAGCCTGCCTATGAGGGATATGAAAATTACTATAATCAGCAATCGGCACCTGCGGATACTGAATATTATGATTACGGACACGGCGAGGCCCAGGAAACGGCATATGAGCCTTATGCTCAAGATGATTGGGAAAACTCATGGTCCAACTCCGGGGCCGGAGGCAAGGCCCCCGCGGCCAGGCAGTCAAAGGGATCGTATAGAGAGCATCCATATCGATACTGAACGGCTACTGGTAGAGAGTTGCTATGGCAACTGTCTCCGATTGTaactcacttttttcaaaaGTTGTCAGAAAACTCTAGGTGCAGTTGACACATTGAACTCCAGTTTACCAGGCTTTTTAAGGTCTACTGAAAGTCCCTGGAAAGAGTAGTGGCCTCTGTGACTGACTGCTTCTGTCAATTACTAATCCCTGTAGGGATTTGTCTGGATTAAAGAAGAGGGAGCTTTTATTATCACTACTGAGAGAATGCTCTGCTCTACTGAAATAT

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278042 lncRNA downstream 58593 22705717 ~ 22719412 (-) False G205297
TU278043 lncRNA downstream 71361 22705717 ~ 22706644 (-) True G205297
TU278044 lncRNA downstream 71361 22705865 ~ 22706644 (-) False G205297
TU277949 lncRNA downstream 142543 22635201 ~ 22635462 (-) True G205242
TU277916 lncRNA downstream 250919 22524966 ~ 22527086 (-) True G205219
XR_005637258.1 lncRNA upstream 105172 22888644 ~ 22895642 (-) False LOC120548708
XR_005637259.1 lncRNA upstream 105172 22888644 ~ 22895400 (-) True LOC120548708
XR_005637417.1 lncRNA upstream 126500 22909972 ~ 22920458 (-) True LOC120549686
TU278158 lncRNA upstream 126635 22910107 ~ 22930112 (-) False G205380
XR_005637418.1 lncRNA upstream 166755 22950227 ~ 22951060 (-) True LOC120549687
XM_039786088.1 mRNA downstream 1061 22772888 ~ 22776944 (-) True tmem39b
XM_039786087.1 mRNA downstream 5943 22764845 ~ 22772062 (-) False ccdc28b
XM_039786086.1 mRNA downstream 5943 22764845 ~ 22772062 (-) True ccdc28b
XM_039786078.1 mRNA downstream 30467 22737837 ~ 22747538 (-) True LOC120549277
XM_039786077.1 mRNA downstream 42978 22722780 ~ 22735027 (-) False mthfd1b
XM_039785328.1 mRNA upstream 2013 22785485 ~ 22788583 (-) True zbtb8os
XM_039785327.1 mRNA upstream 11129 22794601 ~ 22799993 (-) True LOC120548822
XM_039785322.1 mRNA upstream 49330 22832802 ~ 22835500 (-) True LOC120548820
XM_039785436.1 mRNA upstream 59117 22842589 ~ 22846393 (-) True si:ch211-67f13.7
XM_039786779.1 mRNA upstream 65312 22848784 ~ 22862634 (-) True LOC120549695
TU277654 other downstream 846774 21930613 ~ 21931231 (-) False chrm5a
TU277598 other downstream 1020428 21752417 ~ 21757577 (-) False LOC120549141
TU277199 other downstream 1924921 20852096 ~ 20853084 (-) True G204685
TU276123 other downstream 4593431 18182055 ~ 18184574 (-) True G203836
TU276045 other downstream 4694476 18081091 ~ 18083529 (-) False znf292a
TU278157 other upstream 126635 22910107 ~ 22937857 (-) True G205380
TU278155 other upstream 161465 22944937 ~ 22947793 (-) False LOC120549684
unassigned_transcript_1158 other upstream 515315 23298787 ~ 23298860 (-) True trnai-aau_28
unassigned_transcript_1159 other upstream 545697 23329169 ~ 23329242 (-) True trnai-aau_29
TU278342 other upstream 924517 23707989 ~ 23710835 (-) False LOC120548654

Expression Profile