RNA id: XM_039786607.1


Basic Information

Item Value
RNA id XM_039786607.1
length 2664
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC120549589
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 24519641 ~ 24526632 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTACATCCCATTGATTAGACGCGATACAAACTATCCGCCTCTTGTCGCTGTTGTCTCCTGTGGTGTGCGCTAAAAGCCAGCCAAAAAAGCACTAAAATGGCGCTTACTTCCCAAGGAACAAAGAAAAAAGTTTGCTACTACTATGATGGTGATGTTGGAAATTACTACTATGGTCAGGGGCACCCAATGAAGCCCCACCGAATCCGCATGACTCACAACCTGTTGCTCAACTATGGACTCTACAGAAAAATGGAGATATATCGTCCACACAAAGCCAGCGGAGAAGAGATGACCAAGTATCACAGTGATGATTACATCAAATTCCTGCGTTCAATTCGACCAGACAACATGTCAGAGTACAGCAAACAAATGCAGAGATTTAATGTGGGGGAGGACTGTCCAGTGTTTGATGGTTTATTTGAGTTCTGCCAGCTCTCAGGAGGGGGCTCCGTTGCTGGTGCGGTGAAGTTGAACAAACAGCAGACTGACATTGCTATCAACTGGGCTGGAGGCCTGCATCACGCCAAGAAGTCTGAGGCTTCTGGCTTTTGCTATGTCAATGACATCGTACTGGCTATCCTGGAGTTACTGAAATACCACCAGAGAGTTCTGTACATAGATATTGACATCCATCATGGAGATGGTGTTGAAGAGGCCTTCTACACCACAGAccgtgtcatgacagtgtcctTCCACAAGTATGGAGAGTACTTCCCTGGGACAGGTGACCTGAGGGACATCGGTGCTGGTAAGGGTAAATATTATGCTGTGAATTACCCGCTGAGGGATGGGATTGACGATGAGTCATATGAAGCCATATTCAAACCTATCATGGCCAAGGTGATGGAGATGTACCAACCCAGCGCAGTGGTTCTGCAGTGTGGAGCTGATTCACTGTCAGGAGACAGGCTTGGTTGCTTCAACCTCACCATTAAAGGCCATGCCAAGTGTGTGGAGTACATGAAGAGTTTCAACCTGCCACTGCTAATGCTGGGTGGAGGAGGCTACACCATCCGTAATGTGGCACGCTGCTGGACATATGAGACTGCTGTAGCCCTTGATACCTCCATCCCCAACGAGCTCCCTTACAACGACTACTTTGAGTACTTCGGACCAGACTTCAAGCTTCACATCAGCCCCTCCAACATGACCAATCAGAACACCAATGACTACCTGGAGAAGATCAAGCAGCGCTTGTTTGAGAACTTGCGTATGCTGCCCCACGCCCCGGGAGTCCAGATGCAGGCCATCCCCGAGGATGCCGTACAGGAGGACAGTGGcgatgaggaggaggatgacCCCAACAAACGCATCTCCATCCGTGCTCATGACAAGAGGATAGCGTGTGAGGAGGAGTTCTCTGACTCTGAAGATGAAGGCGAGGGAGGCCGCAGAAACGCAGCCAGCTTCAAGAAAGCCAAGCGAGTCAAAactgaaggagagaaagaggtggaagaaaaggagaagaaaggTGAGGAAGAAACAAAAGAagcaaaagaagaagagaaggtgccagaggaggagaaaatggACACATCAAAGCCAAAAGAGGAGTCCAAGACACCTTGAGGTCCTCAGCAGCCAATGATGACATTGCAACTGATCAGAacgcatcttttttttttttttggatacaTCATCTTTCCAGGCTGCTGCTGTGGAAATCGGTGAAGAACTGTACCTTTTGTAATGAGACCCCACTCCATCAAAATGGGGGCGGGGGATCTAAATATTTTCTAGGACACCTTTTCAACCTTACCTGTTTATGGACTGAGGTCAGACTGAGTGTTTCGTTTTTTTGaatgctttttcattttttattaatctTTTTATTCTGTGACACTTGCTTTTCCCTTGTGATGCAACTCTGTAAAAATGATTTAGTACATGTATGCTTTTATATATCTGAcggatttaatttatttaaatcatAGATATTTTGGCTACTGTTGTCTTTCAATCCCACTTTAGTCATGTCTTTAAATATGTAGTTGAAGCATGTTTATACAATAGATCCTTTTCTGTAATACATTGTGTAACTGGTCTTGCCTGCTAAAGGTCCCCAAGCGTGGTTAAGAGGGTTGTGTATACCTGAATACCTTTTTACATGGCACAGTATTAATAAATTACAGTCCTGTATTGTAGGTTGTAATTTAGTATGTGTCCTTTACACATTGACATCTTCAAATTTCTGGGACTCCTTCCACACAATAGACCTTTTcgacggcagacatgttgacatgtcatagtaggaaaagcacaggtgtattcaaaaccattaatgatggctgcattccacttaggagaggccctggtattgtgcatgctgactcactgaaacagcttactgggacacttgatggaattgagccattgttaaggttatcactttcagctgtgcttttcctactataacaagtcaacatgtctgctgtgaaaaaggtccatattGAAAATGTTTGAGTCCTGTAACGTCACTGCTGGTGTCAGGCTTTGATTCCAGAGTGTAGTGTTCTGTAAAATGGGAAGCAAGACAAACACCAGAATCCATttgttgtatatatttgtattctgAAAACATGAGTAAAAGTGTCATTTAAATCTGTCAGACCTCCAGTGTGCGTTGACCAcacttttaacaataaaaaaatgccccaaaaaa

Function

GO: NA

KEGG:

id description
K06067 HDAC1_2; histone deacetylase 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637408.1 lncRNA downstream 877 24518012 ~ 24518764 (-) True LOC120549591
TU278567 lncRNA downstream 42748 24475935 ~ 24476893 (-) True G205702
TU278565 lncRNA downstream 73245 24443819 ~ 24446396 (-) True G205701
XR_005637307.1 lncRNA downstream 85808 24429974 ~ 24433833 (-) True LOC120549041
TU278492 lncRNA downstream 286532 24232642 ~ 24233109 (-) True G205643
TU278643 lncRNA upstream 42754 24569386 ~ 24571220 (-) False G205761
TU278638 lncRNA upstream 44655 24571287 ~ 24575939 (-) True G205761
TU278668 lncRNA upstream 72122 24598754 ~ 24600552 (-) True G205781
TU278660 lncRNA upstream 89494 24616126 ~ 24617454 (-) False runx3
TU278742 lncRNA upstream 256745 24783377 ~ 24785779 (-) True G205818
XM_039785643.1 mRNA downstream 4983 24512063 ~ 24514658 (-) True zpcx
XM_039785644.1 mRNA downstream 4983 24512067 ~ 24514658 (-) False zpcx
XM_039785641.1 mRNA downstream 13688 24497837 ~ 24505953 (-) True pabpc4
XM_039785640.1 mRNA downstream 24060 24491625 ~ 24495581 (-) True ppie
XM_039785637.1 mRNA downstream 28536 24488895 ~ 24491105 (-) True gjb10
XM_039786996.1 mRNA upstream 655 24527287 ~ 24540160 (-) True lck
XM_039786461.1 mRNA upstream 16368 24543000 ~ 24544882 (-) True fam167b
XM_039786280.1 mRNA upstream 89286 24615918 ~ 24664770 (-) False runx3
XM_039786277.1 mRNA upstream 89286 24615918 ~ 24664764 (-) True runx3
XM_039786278.1 mRNA upstream 89286 24615918 ~ 24654815 (-) False runx3
TU278342 other downstream 808806 23707989 ~ 23710835 (-) False LOC120548654
unassigned_transcript_1159 other downstream 1190399 23329169 ~ 23329242 (-) True trnai-aau_29
unassigned_transcript_1158 other downstream 1220781 23298787 ~ 23298860 (-) True trnai-aau_28
TU278155 other downstream 1571848 22944937 ~ 22947793 (-) False LOC120549684
TU278157 other downstream 1581784 22910107 ~ 22937857 (-) True G205380
XR_005637356.1 other upstream 225784 24752416 ~ 24755421 (-) True rsrp1
TU278759 other upstream 322332 24848964 ~ 24876860 (-) False fndc5a
TU278771 other upstream 426574 24953206 ~ 24957041 (-) True G205845
TU278806 other upstream 545723 25072355 ~ 25074124 (-) True G205866
XR_005637425.1 other upstream 806258 25332890 ~ 25336666 (-) False LOC120549744

Expression Profile