RNA id: XM_039786779.1



Basic Information


Item Value
RNA id XM_039786779.1
length 3515
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC120549695
representative True

Chromosome Information


Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 22848784 ~ 22862634 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCGTAGTAGAATGAGTAGAATGAATGAGCGGAAAGGGCAGAGCAGCACGACCACGAGAGACTTGACTCAGAGCACTGAGCGGGGCAGTATGAAGCTGTGAAGCGGCTTTTTTCTTTTGACACTGACAAGTGTCAGTCTATgatatatacaaaaatatattaattaatgtatCGTCTTGATAGCACAATGGCACGAGGAGAGGGCGCCGAGCAGTACGCAGCGAGTTTATTGTCAGTCAAACCTATAAATACAGATATCAAGACAGCAAAGccAAATGACCAAAGAaaccgtctgtctgtgtggaaTAAATTGTGCTATGCTATTGGCGGGGCTCCCTACCAGATCACAGGCAGCGCTCTGGGCTTTTtcctccagatctacctgctggaTGTGGCTCAGCTGGATCCCTTCCATGCCTCCATCATCCTGTTTGTGGGCCGGGCCTGGGACGCTGTCACAGACCCCACAGTGGGTTTCCTGGTGAGCCGGAGTAGATGGACCCGCATCGGCCGCATGATGCCCTGGATCCTTTTCTCTACTCCTTTTGCCGTGCTGACTTACTTCCTCATCTGGTACGTGCCTCCTTTTGAGCAGGGGAAGGTCGTCTGGTACCTGATCTTTTACTGCCTCTTCCAGTCAATGCAGACGtGCTTCCACGTGCCATATTCAGCCCTCACCATGTTCATCAGCAACGACCAGAAAGAGAGGGACTCTGCCACTGCTTATCGTATGATGGTGGAGGTGCTGGGCACAGTTCTGGGCACAGCAATCCAGGGACAGATAGTAGGTGGCGACACAAGTTGTCCCACTGAGCCTGATGAACACGACAGCAGAAACTCAACCAACACGTCCATAGTTTCACTGAATGAGACGAAACGAGCTTACTTGATTTCTTCAGGGGTCATCAGCATCATCTACATCTTCTGTGCCACAGTCTTGTTTTTGGGTGTGAAGGAGAAAAAAGAGAGCGGGCGAAAGGTATCCCAGCTCACCTTCTGTCAGGGCCTGTGGCTGGTGATGGGTTACGGACCATACATCAAACTGGTCATCGGCTTCCTCTTCACCTCTCTGGCCTTCATGctaCTGGAGGGAAACTTTGCTCTTTTCATCACCTACGCTCTCGGCCATAGAAAGGACTACCAGAATATTCTCCTGGTCATCATGCTATCTGGGACTGTGACCATCCCGTTTTGGCAGTGGTTTCTGACTCGGTTTGGGAAGAAGAAGGCAGTTTACTTCGGCATCACGTGGGCAGTACCCTTCATGATCCTAATCGTCTGCATCAAGAGCAACCTGACCATTTCTTACTTGGTCTCAGTGGCAGCCGGTGTGAGCGTGGCGGCAGCTTTCCTCCTGCCTTGGTCGATGCTTCCCGATGTAGTGGATGACTTCAAGGTGAAAAACCCAGACATCCATGGTCACGAAGCCCTCTTCTACTCCTACTATGTGTTCTTTATCAAGTTTGCCTCTGGACTATCCCTGGGGGTCTCTACACTCAGTTTGAAatttgCCGGCTATGTGACTGGGAGCTGCTCACAACCCGAGGCGGTCAGTTTAACCCTGAAGGTGCTGGTCTCCCCTGTGCCTGTGGCTCTTATAGCTGTGGGACTGTTGATATTGTGGACCTACCCTATTGATGAAGAAAGGAGGCAGGGCAACCGAAAACTACTGCAGGAAATGCTGGACTCGGAGTCTGAAACTTCAGTGCTTGGGAGCAGCGTGTAGCGGCAGAGGACGAGCCAGCCACCACAGGTGCTTTAACGTGTTTGCACAGGCTGTCGAGGGACACGACCACCAGCAGAGGAGCGACCACAGACCACTGCTGCACAAACACAATCCGCATCAAGTAGCTCCCTACAGTGGATCACGCAAGTTTACGTCGCCCTCTATTGGCTGGCCAGTAGCATTGCGTGTGTGAAGTATTTTCTGTGTCCCAATTAAACTCTATCTGTTAAAACTAGAAAGCATACACAATTTACTAATCTACACAGTCCCGGGTTATTTTGGCAGAACCAAAGTCCCGGGTTCACTTACTGATATACTTTTTCCTCTTTTAGAGGTTTTCTTTCATTGCCTAGCTGGAACACAGCACTGGGATCTGTCCATTTTGGACCTAAATGGGTATCGGTTACTGTACTGGACAGTCAAATCTGACCACCTTATCATTTAAAATGAAGATAAAACCATGTTTGTGTTAACATTCAACAACTACAGCTCCTAGAAGTGTATGGCTCGTGGGAGCTCAGTCATGGAGTTTTACTCAACAAGGAAATccaaagtgattttttttttttttttttttttcaaagatgtGTGATTCATGATTCATTCAACTTGTATGTGGCTGTCTACAGTGTtattgcattgtgggacaaCAGTTTTCATCAACTCCATTTGTACACTACATCCTGAAGTACTAGGTTGGAATTGGGACACAGCTAGTGATTTGTGGTATTGTTTATGAAGTATTTATTTGCTGGTTGACGAGATCTGACTTTTACTCGTTCAGACTGGAGTGTAATGTTACCTTTTGATGTTTACTATGTCTTAGGTCACTTGTGTTTTACTTTCCATTCAGACAGTTCTCTGAAGGAAATAAACTGTATGAACCCTTATTTCGGGTATACCAGCACTATTTCACTAATTGGCGTTGTACGGAGCTGTGCTACAATTTCTGCGTTACATTTTCTGTGTTTCCTGTGGATTATTTCAGAAAGGCAAAAACTTAAAGTGTACTTGAATCTTCTGAAGGGGAAATGCACCTTGTGgtattatgtactgtatgtatgaaacACATCTTTACTAACTAGTTGCAATGAGATTTACTGTTGAACTTGTTACTTGTTTTCTAAAAGGGTTTCCCACCTTTTTGTGCTTTAACATTTCAGCCAATCTCCATCAGGTTTAATAGACATTTCTAAATGTCTTAAGTAATTTCATTTAGCATGTTTTCACTTCCCAAAGGGCAGAGTAACATGCTttatttaactatttatttaaacaaactatttaAGGGGTTATAGGTTTTTCTTATGAAAGCACATGGGTATAATTTATCAACAGTGAATGGTTATTGAGTCATCTGTGATTTTCAAGTCCTGTGAGAAAACATCAAtgatttttctgttttctaagaagaaatATCACAAGTTGCTATACTGTGACAAACATGTTGCTTTTAGTTTTGGGACTCTGAAAAACAGCTGCCAAAAACCTAGTTTTTCTGTTTTAGggagtcctcactttagatggcaTGATTTAACAACATGATCTTATTGGTTAATTTAAGAGAATGTATTTAATGCGTAGTTTATTTGTAATTGCTCTGAATGAACTGGCTGTGGCATATATCTCTTCTTGGTCTTCTTGGCGTTTATATGcagctgtatgtatgtatatatgtaaatacgtttttcttttcaaatttgACATTGAGGAGCAATATATAAATTAGCAAAGACAAATTAATGTGCTGTTAATTTGTCATTTTAAGTTTGTAAATAAAGTTTATCAAA

Function


GO: NA

KEGG:

id description
K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU278042 lncRNA downstream 129372 22705717 ~ 22719412 (-) False G205297
TU278043 lncRNA downstream 142140 22705717 ~ 22706644 (-) True G205297
TU278044 lncRNA downstream 142140 22705865 ~ 22706644 (-) False G205297
TU277949 lncRNA downstream 213322 22635201 ~ 22635462 (-) True G205242
TU277916 lncRNA downstream 321698 22524966 ~ 22527086 (-) True G205219
XR_005637258.1 lncRNA upstream 26010 22888644 ~ 22895642 (-) False LOC120548708
XR_005637259.1 lncRNA upstream 26010 22888644 ~ 22895400 (-) True LOC120548708
XR_005637417.1 lncRNA upstream 47338 22909972 ~ 22920458 (-) True LOC120549686
TU278158 lncRNA upstream 47473 22910107 ~ 22930112 (-) False G205380
XR_005637418.1 lncRNA upstream 87593 22950227 ~ 22951060 (-) True LOC120549687
XM_039785436.1 mRNA downstream 2391 22842589 ~ 22846393 (-) True si:ch211-67f13.7
XM_039785322.1 mRNA downstream 13284 22832802 ~ 22835500 (-) True LOC120548820
XM_039785327.1 mRNA downstream 48791 22794601 ~ 22799993 (-) True LOC120548822
XM_039785328.1 mRNA downstream 60201 22785485 ~ 22788583 (-) True zbtb8os
XM_039786089.1 mRNA downstream 65312 22779013 ~ 22783472 (-) True LOC120549283
XM_039786763.1 mRNA upstream 62243 22924877 ~ 22935375 (-) True LOC120549682
XM_039786765.1 mRNA upstream 65324 22927958 ~ 22933497 (-) False LOC120549683
XM_039786764.1 mRNA upstream 69742 22932376 ~ 22933497 (-) True LOC120549683
XM_039786766.1 mRNA upstream 82303 22944937 ~ 22947810 (-) True LOC120549684
XM_039786759.1 mRNA upstream 93864 22956498 ~ 23017975 (-) False LOC120549679
XR_005637366.1 other downstream 65312 22778005 ~ 22783472 (-) False LOC120549283
TU277654 other downstream 917553 21930613 ~ 21931231 (-) False chrm5a
TU277598 other downstream 1091207 21752417 ~ 21757577 (-) False LOC120549141
TU277199 other downstream 1995700 20852096 ~ 20853084 (-) True G204685
TU276123 other downstream 4664210 18182055 ~ 18184574 (-) True G203836
TU278157 other upstream 47473 22910107 ~ 22937857 (-) True G205380
TU278155 other upstream 82303 22944937 ~ 22947793 (-) False LOC120549684
unassigned_transcript_1158 other upstream 436153 23298787 ~ 23298860 (-) True trnai-aau_28
unassigned_transcript_1159 other upstream 466535 23329169 ~ 23329242 (-) True trnai-aau_29
TU278342 other upstream 845355 23707989 ~ 23710835 (-) False LOC120548654

Expression Profile