RNA id: TU283065


Basic Information

Item Value
RNA id TU283065
length 672
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G208888
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1334982 ~ 1367880 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacagactcagattattattctaagagtctgacaacattatggaaaggatccctacagagatagaccttttagttaaagagtaagatccttttagtttaacatgaaacagccccgaaatcaccatcaccaaactacaccagactccatgtaagtaatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcctgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaagtaatcaggacttttagtgtgtatagagccagcatatttccaccagactccatgtaaataatcaggatttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283064 lncRNA upstream 1432 1332746 ~ 1333550 (+) True G208887
TU283053 lncRNA upstream 6953 1327190 ~ 1328029 (+) False stambpl1
TU283020 lncRNA upstream 108297 1209423 ~ 1226685 (+) True G208864
TU283025 lncRNA upstream 134844 1198922 ~ 1200138 (+) False LOC120551437
TU282871 lncRNA downstream 62629 1430509 ~ 1433152 (+) True G208777
TU283094 lncRNA downstream 123810 1491690 ~ 1492031 (+) True G208914
XR_005637781.1 lncRNA downstream 139461 1507341 ~ 1529819 (+) True LOC120550773
TU283096 lncRNA downstream 160431 1528311 ~ 1614871 (+) True G208916
TU283098 lncRNA downstream 180893 1548773 ~ 1550127 (+) True G208917
XM_039788864.1 mRNA upstream 7517 1313201 ~ 1327465 (+) True stambpl1
XM_039788820.1 mRNA upstream 31899 1298027 ~ 1303083 (+) True LOC120551397
XM_039788821.1 mRNA upstream 31899 1298029 ~ 1303083 (+) False LOC120551397
XM_039788823.1 mRNA upstream 99160 1211728 ~ 1235822 (+) True lipf
XM_039788822.1 mRNA upstream 141761 1181045 ~ 1193221 (+) True ptenb
XM_039788831.1 mRNA downstream 10771 1378651 ~ 1380831 (+) True LOC120551407
XM_039788857.1 mRNA downstream 17483 1385363 ~ 1398958 (+) True LOC120551423
XM_039788829.1 mRNA downstream 45908 1413788 ~ 1427061 (+) True LOC120551406
XM_039788839.1 mRNA downstream 62592 1430472 ~ 1437585 (+) True LOC120551410
XM_039788840.1 mRNA downstream 62592 1430472 ~ 1437585 (+) False LOC120551410
TU283035 other upstream 129734 1204590 ~ 1205248 (+) True G208867
TU283000 other upstream 241385 1090547 ~ 1093597 (+) True G208852
TU282997 other upstream 275542 1058842 ~ 1059440 (+) True G208851
TU282854 other upstream 679762 654899 ~ 655220 (+) True G208768
TU282798 other upstream 784905 536938 ~ 550077 (+) True G208758
TU282870 other downstream 62629 1430509 ~ 1493181 (+) False G208777
TU283091 other downstream 98138 1466018 ~ 1571837 (+) True G208911
TU283086 other downstream 130567 1498447 ~ 1577370 (+) True LOC120550772
XR_005637782.1 other downstream 226601 1594481 ~ 1613738 (+) False LOC120550774
TU283626 other downstream 964298 2332178 ~ 2334285 (+) True G209284

Expression Profile