RNA id: TU283119


Basic Information

Item Value
RNA id TU283119
length 2771
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G208936
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1840626 ~ 1843454 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGAGTCTGAAGTGACTTGCTGACTTTATTCATCGAGTGCAGCCGACAGTCATCCAACGAGATTTACATTCAAAACAAAACGAGTGGAGCCGACCGGACACGTCAGCTTTGATTGACAGCGCTATAAATTTGTGAAGACATTAACgttcagttttcttttctttttttttggataCAAAACAATGGTTTGTTTTCAGTGTGGCACcaccacatatacacacacacacacacaggtttaatAACAACATGACTCAACATCCATTTATACAAAACAATCTGagatataaatacatatttatcaTCTGTATGTTACAAAAAGAGTTCCCTCGGTGACGTGATCAAACACAGTGACGTATAAATATTCAGCCAAAAATCACAAAACccacagagaaaacacaagggggcggggcttggaTGCATGGGCGGGGCTTAAGTGTTCAGGGCGGGGCttagggaggaggaggaggagctagaataaaaaaagacaacgcTGAACAAGAAGACAGAGAGTAACAGTAGCCTATCAGGATGCAGGATTTGTTTGTACAGtgtgatgatgaaataaaaGACAAGATAAAAGTAAATCAACAAACAGGCAGAGGTGAGAAGTCACTGAAACTGCTCAACCCCCCAAAAGATTCTTGTTAGAAACTCGTTCATCTGCTAAATTCTAGTTTTTACAATACCCTCTGGactgtgattggctgacagcagcagaggtgaactagcctggctctgccctccTACGTACATCCGCTCAAttctttcattttccttcagtacattgtctgggtttgcggtatatttttgggttttctccggtccaatcagcaaacagagggaggggctgagaacgatgactttgaggttgtgcgctagttAGAGTTGTATTTCCGTAATggtggcggagaaagatgcgagcgaagccattccgtctgttgtggcaacgctgccgaatatccacaagttaaagcccgagcaagaacagtctttgctgagttgtgttggtggccatgatgtcgtgGCTCTCCTCCCCACGGCGTTCAGGaaggctaaggctaacgctagcgatgctaaggctaacgctagcgatgctaagcccacgtcacgaccaaatgttagcgattggttcttggagatccagagtggctctgagCAGATCCAAtaattttaaacttcaacagagtacccgccttcaagttaacacttgtcaatggagagtggccagactctctggaccactgaaatggaccagagtctggtaggaccaggctaatggaccagagtctggtaggaccaggctagtgtaccagagtctggtaggaccaggctaatggaccagagtctggtaggaccaggctagtgtaccagagtctggaagGACCAGGCTACtctggaccagagtctggtaggaccaggctgatgtaccagagtctggtaggaccaggctactcTGGGCCAGAgactggtaggaccaggcttatgtaccagagtctggtaggaccaggctgacgtaccagagtctggtaggaccaggctactcTGGGCCAGAgactggtaggaccaggctgatgtaccagagtctggtaggaccaggctagtgcaccagagtctggtagaCTAGgttaatgtaccagagtctggtgggaccaggctaatggaccagagtctggtaggaccagactgatgtaccagagtctggtaggaccagGCTACtctggaccagagtctggtaggaccaggctgatgtaccagagtctggtgggaccaggctaatggaccaaagtatggtaGGACTAGGCTACTCtcgaccagagtctggtaggaccaggctagtgtaccagaatCTGTGGTGTCAGACAGAACGGAAGAACTAATTTCCGAGTTGGGAAATGCGTATGGATGCCTGCTGAAGTTGGAACAACACATCAGAAACTCAGGAAAGATTTGGGTGCTAACTTGCTGACTTGAAGTCATTTGTGTCATTAAcgctaaaaatgtttttatcaattcatatattttataactttttgCTTGGATATTATGTTTAATACGGTGTTACCGTCAGCTCtacctccacagctctgtggaggagggtctgactagtcctcacagcattcctggattggagaacaacgtgctctggtttattggcatttctttgaaccaatcacaatcgtcgtgggcggggctaagctccggacggagccacggtgcctctgctaaatagtctcaggaaggaacatgttttggtggaacatgtggacgctcaaaagtagttttagtcgtgcaacagaagcATATTGTCTCAGAGTTCAGTATTCACCTCTTTTGCAGCGGACCAATTAGCTGTGAGAATAGATTCTGTCAAAACAAAGGCGGATTTAAATGTGACCATAAAAATAATCAGTGTGACGTTAATGAGGAACAACAGGGGACCAAACACTGAGCCCTGAGGAACTCCACTTTCAACACACGGTTGTTTAACGTCCTCAATTTTCAGCTCACGTTTGGATAAGTTCCCCAAAATTACATCACAAGTAGAGGAAATGATGTCACAGTTTGTACACAGAGTTAAACATGAGAACATTTACAGAAAagtccttttttaaattattttctttgttaGAAACCGGAGCCTTCGTCCAGTGAGTTTATTTCGTTTCTTTTTTACTGTGACGGAGACGCTCGATACTCCGTCCTGACTGGTCAGCTGCTGCCTGAGGCCCCGCCCCCTCTGAGGTGATTGGTGCTCGTGGCTGAGGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283112 lncRNA upstream 75838 1757680 ~ 1764788 (+) True G208930
TU283113 lncRNA upstream 78444 1761289 ~ 1762182 (+) True G208931
TU283087 lncRNA upstream 142478 1678726 ~ 1698148 (+) True G208907
TU283088 lncRNA upstream 202168 1620734 ~ 1638458 (+) True G208908
TU283084 lncRNA upstream 204541 1634840 ~ 1636085 (+) False noc3l
TU283121 lncRNA downstream 5649 1849103 ~ 1927193 (+) True G208938
TU283125 lncRNA downstream 16043 1859497 ~ 1898988 (+) False G208941
TU283124 lncRNA downstream 18708 1862162 ~ 1898988 (+) True G208941
TU283132 lncRNA downstream 103856 1947310 ~ 1952151 (+) True G208945
TU283139 lncRNA downstream 122021 1965475 ~ 1966728 (+) True G208950
XM_039789261.1 mRNA upstream 177162 1648435 ~ 1663464 (+) True rpp30
XM_039789059.1 mRNA upstream 204491 1616722 ~ 1636135 (+) True noc3l
XM_039787610.1 mRNA upstream 224546 1594481 ~ 1616080 (+) False LOC120550774
XM_039789061.1 mRNA downstream 149523 1992977 ~ 2006545 (+) True LOC120551573
XM_039789062.1 mRNA downstream 434446 2277900 ~ 2298804 (+) True LOC120551574
XM_039788394.1 mRNA downstream 458837 2302291 ~ 2312449 (+) True LOC120551177
XM_039789064.1 mRNA downstream 500892 2344346 ~ 2362359 (+) True LOC120551576
XM_039788750.1 mRNA downstream 683208 2526662 ~ 2533463 (+) True LOC120551356
XR_005637782.1 other upstream 226888 1594481 ~ 1613738 (+) False LOC120550774
TU283086 other upstream 263256 1498447 ~ 1577370 (+) True LOC120550772
TU283091 other upstream 268789 1466018 ~ 1571837 (+) True G208911
TU282870 other upstream 347445 1430509 ~ 1493181 (+) False G208777
TU283035 other upstream 635378 1204590 ~ 1205248 (+) True G208867
TU283626 other downstream 488724 2332178 ~ 2334285 (+) True G209284
TU283630 other downstream 500827 2344281 ~ 2360302 (+) False LOC120551576
TU283706 other downstream 872191 2715645 ~ 2797135 (+) True G209344
TU283708 other downstream 936287 2779741 ~ 2833674 (+) False G209344
TU283964 other downstream 1802555 3646009 ~ 3646997 (+) True G209514

Expression Profile