RNA id: TU283149


Basic Information

Item Value
RNA id TU283149
length 242
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G208960
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 1986570 ~ 1986913 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgttcagatgcattctggtcttacagggaggtgtgttcaggtgcattctggtcttacagggaggtgtgttcaggtgcattctggtcttacagggaggtgtgttcaggtgcattctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcgttctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctaatcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283139 lncRNA upstream 19842 1965475 ~ 1966728 (+) True G208950
TU283132 lncRNA upstream 34419 1947310 ~ 1952151 (+) True G208945
TU283121 lncRNA upstream 59377 1849103 ~ 1927193 (+) True G208938
TU283125 lncRNA upstream 87582 1859497 ~ 1898988 (+) False G208941
TU283124 lncRNA upstream 87582 1862162 ~ 1898988 (+) True G208941
TU283151 lncRNA downstream 14500 2001413 ~ 2002522 (+) True G208962
TU283153 lncRNA downstream 20382 2007295 ~ 2009130 (+) True G208963
TU283160 lncRNA downstream 44428 2031341 ~ 2031716 (+) True G208970
TU283546 lncRNA downstream 60948 2047861 ~ 2094718 (+) True G209234
TU283549 lncRNA downstream 89352 2076265 ~ 2077481 (+) True G209237
XM_039789261.1 mRNA upstream 323106 1648435 ~ 1663464 (+) True rpp30
XM_039789059.1 mRNA upstream 350435 1616722 ~ 1636135 (+) True noc3l
XM_039787610.1 mRNA upstream 370490 1594481 ~ 1616080 (+) False LOC120550774
XM_039789061.1 mRNA downstream 6064 1992977 ~ 2006545 (+) True LOC120551573
XM_039789062.1 mRNA downstream 290987 2277900 ~ 2298804 (+) True LOC120551574
XM_039788394.1 mRNA downstream 315378 2302291 ~ 2312449 (+) True LOC120551177
XM_039789064.1 mRNA downstream 357433 2344346 ~ 2362359 (+) True LOC120551576
XM_039788750.1 mRNA downstream 539749 2526662 ~ 2533463 (+) True LOC120551356
XR_005637782.1 other upstream 372832 1594481 ~ 1613738 (+) False LOC120550774
TU283086 other upstream 409200 1498447 ~ 1577370 (+) True LOC120550772
TU283091 other upstream 414733 1466018 ~ 1571837 (+) True G208911
TU282870 other upstream 493389 1430509 ~ 1493181 (+) False G208777
TU283035 other upstream 781322 1204590 ~ 1205248 (+) True G208867
TU283626 other downstream 345265 2332178 ~ 2334285 (+) True G209284
TU283630 other downstream 357368 2344281 ~ 2360302 (+) False LOC120551576
TU283706 other downstream 728732 2715645 ~ 2797135 (+) True G209344
TU283708 other downstream 792828 2779741 ~ 2833674 (+) False G209344
TU283964 other downstream 1659096 3646009 ~ 3646997 (+) True G209514

Expression Profile