RNA id: TU283151


Basic Information

Item Value
RNA id TU283151
length 290
lncRNA type intronic
GC content 0.57
exon number 3
gene id G208962
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 2001413 ~ 2002522 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgatagtcgaacctcgggttgaagaggaacaatgcggattccgtcctggtcgtggaacaacggaccagctcttcactctcgcaaggatcctggagggagcctgggagtatgcccaaccggtctacatgtgttttgtgaggggggtctcttctcagggccatccaatctctgtacgaccaaagtgagagctgtgtccgggttctcggcagtaaggaggtgttccaggcacgtccagctgggaggaggcctcggggaagacccaggactaggtgaagggattatatctccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283149 lncRNA upstream 14500 1986570 ~ 1986913 (+) True G208960
TU283139 lncRNA upstream 34685 1965475 ~ 1966728 (+) True G208950
TU283132 lncRNA upstream 49262 1947310 ~ 1952151 (+) True G208945
TU283121 lncRNA upstream 74220 1849103 ~ 1927193 (+) True G208938
TU283153 lncRNA downstream 4773 2007295 ~ 2009130 (+) True G208963
TU283160 lncRNA downstream 28819 2031341 ~ 2031716 (+) True G208970
TU283546 lncRNA downstream 45339 2047861 ~ 2094718 (+) True G209234
TU283549 lncRNA downstream 73743 2076265 ~ 2077481 (+) True G209237
TU283611 lncRNA downstream 249168 2251690 ~ 2269428 (+) True G209275
XM_039789261.1 mRNA upstream 337949 1648435 ~ 1663464 (+) True rpp30
XM_039789059.1 mRNA upstream 365278 1616722 ~ 1636135 (+) True noc3l
XM_039787610.1 mRNA upstream 385333 1594481 ~ 1616080 (+) False LOC120550774
XM_039789062.1 mRNA downstream 275378 2277900 ~ 2298804 (+) True LOC120551574
XM_039788394.1 mRNA downstream 299769 2302291 ~ 2312449 (+) True LOC120551177
XM_039789064.1 mRNA downstream 341824 2344346 ~ 2362359 (+) True LOC120551576
XM_039788750.1 mRNA downstream 524140 2526662 ~ 2533463 (+) True LOC120551356
XM_039789069.1 mRNA downstream 1584557 3587079 ~ 3621179 (+) True LOC120551583
XR_005637782.1 other upstream 387675 1594481 ~ 1613738 (+) False LOC120550774
TU283086 other upstream 424043 1498447 ~ 1577370 (+) True LOC120550772
TU283091 other upstream 429576 1466018 ~ 1571837 (+) True G208911
TU282870 other upstream 508232 1430509 ~ 1493181 (+) False G208777
TU283035 other upstream 796165 1204590 ~ 1205248 (+) True G208867
TU283626 other downstream 329656 2332178 ~ 2334285 (+) True G209284
TU283630 other downstream 341759 2344281 ~ 2360302 (+) False LOC120551576
TU283706 other downstream 713123 2715645 ~ 2797135 (+) True G209344
TU283708 other downstream 777219 2779741 ~ 2833674 (+) False G209344
TU283964 other downstream 1643487 3646009 ~ 3646997 (+) True G209514

Expression Profile