RNA id: TU283546


Basic Information

Item Value
RNA id TU283546
length 1893
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G209234
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 2047861 ~ 2094718 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCACTCTGAGGTGTTTCTCTTCAGTTTATTCATGCAGCTTTTACATCTGGAGGAGTTTTACATTCACTACAGGAACAAATACAACATGATCACTGCTACAGAGACACAACAGTTAACCCTTTACACAGGGACAGGAAGACGTCCTGTCTCCATGTTGGACCCTCTGTGAGGACAGAGACACTTCAGTCTGCAGAAACAACAGTTAACCCTTTACACAGGGACAGGAAGACATCCTGTCTCCATGTTGGACCCTCTGTGAGGACAGAGACACTTCAGTCTGCAGACACAACAGTTAACCCTTTACACAGGGACAGGAAGACTACAGGAAGAGTTGGTGAACCAGCCAGAAtacaaaactgtaaaaatacaaaatgaaatgGTATCAAATGAAGTCTTTACATCAAAAACATTGTTACAAATCCCTTCAGAGGTCAGACAGCTGGAAGGGGCGGTGCCTGTGACATCATAGCTGGAAGGGCCGGGGTCACTCTGCTTCCGTCCTGTAGGGGGCGGGGTCACTCTGCTGCCTTCCTGTAGGGGGCGTGGCTTTGAAGGGATTGCTACTTTCAGGCTACGACTGGATTTATTAGCACCATTTATATCAGATGTTcacaaaaagtctaaaagtctgAAAGTTTAATTTTGCATTCAGAGAAAAACTGTTGACTGTATTGATTACTTTATTAATAACTAAAGTTAACTTTATCAGTGAATTAGAAAGTAAAAGACTAAACCACCGAACACATCAGACTGAATTTATAACAGAACAATacagattcagattattaaaATGGTCCGACAGTGGTTCAGATTCAGACTAACAGATATAAGAGTAATATGGATCTGGAATGATTATATTATAAAATACCTTTACAATTAGATAGAAACATGAAATATTACAGACCTAGAGTTAATATCCACCTTAAAGGAACGACTACTGTGGCTTTAATTTACAACGAGCAGAATGGGTTTATGGTTTATTTGAAGAGACCAGCTGTCAATGGAAACATCCATCAGAGGAACCCAGTAAACCCAGTTAGAAAGGGTTCTGGTTGTGTTTCTGGTCCGTCATATTGTCTCCGTATGTCGATGATGAAACAATGTCTGTTAATGAAGGAACCAGGAAGCATTTTCTGGGTCAAACTACTACAATTATTACTACTAATCCTACCACTACTACTAGTGTCTTTTTcagagggacagagacacagacagatgagATGGctttatgttatgtatgtaagATAAGCTACATCTACACTGCTACATTATAGTTTTTAAGCAGTGTTTTGACACAAAAGTGATTTCCGTTTTATCCCCAGCAGCAGAACTAATCTGCATCCATATTAACACGTCTGACATCACAGCTCACATGACATTTCACTCACACTTGGCATGTGCCAAAAACGTTTCCccacttttttcacattttatacttttttttaaacttttttttcacttttttcgaagtttgtcGCTTTCCTaagtttttgtccattttttgcttagtttttgtcgtttgtttacgATGTATATTGCcttttttcgaagtttttgTAGCTGGGCATGTTTAAGGGGCCTGGGCAATCACAGATCACATGATCATTCACACACAATGGGCATGTGCCGCTGACATTAGGTAGCtcgtttttgttgccttttcagaattttttgtcgctttttattGCTTGACATGTTTTAGGGGCTGGGAAACATCGCAGGAGTATGGACGCCAGGCGTAAAAGCAGCAGAAGGCATTTGTCTTTAAAACTAAAACGTagcagtgtagatgtagcctcagAGTACTTCGAATGATGCTGGGAACCATACCAATAACATTCAGTACTCGTTAAAGAACCATTGTTGTAGGATTTCATACTATTTGTAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283160 lncRNA upstream 16145 2031341 ~ 2031716 (+) True G208970
TU283153 lncRNA upstream 38731 2007295 ~ 2009130 (+) True G208963
TU283151 lncRNA upstream 45339 2001413 ~ 2002522 (+) True G208962
TU283149 lncRNA upstream 60948 1986570 ~ 1986913 (+) True G208960
TU283139 lncRNA upstream 81133 1965475 ~ 1966728 (+) True G208950
TU283611 lncRNA downstream 156972 2251690 ~ 2269428 (+) True G209275
TU283619 lncRNA downstream 205724 2300442 ~ 2301400 (+) True G209281
TU283620 lncRNA downstream 205724 2300442 ~ 2301400 (+) False G209281
TU283622 lncRNA downstream 228806 2323524 ~ 2324079 (+) True G209283
TU283623 lncRNA downstream 228806 2323524 ~ 2324079 (+) False G209283
XM_039789061.1 mRNA upstream 41316 1992977 ~ 2006545 (+) True LOC120551573
XM_039789261.1 mRNA upstream 384397 1648435 ~ 1663464 (+) True rpp30
XM_039789059.1 mRNA upstream 411726 1616722 ~ 1636135 (+) True noc3l
XM_039787609.1 mRNA upstream 431781 1594481 ~ 1616080 (+) False LOC120550774
XM_039789062.1 mRNA downstream 183182 2277900 ~ 2298804 (+) True LOC120551574
XM_039788394.1 mRNA downstream 207573 2302291 ~ 2312449 (+) True LOC120551177
XM_039789064.1 mRNA downstream 249628 2344346 ~ 2362359 (+) True LOC120551576
XM_039788750.1 mRNA downstream 431944 2526662 ~ 2533463 (+) True LOC120551356
XM_039789069.1 mRNA downstream 1492361 3587079 ~ 3621179 (+) True LOC120551583
XR_005637782.1 other upstream 434123 1594481 ~ 1613738 (+) False LOC120550774
TU283086 other upstream 470491 1498447 ~ 1577370 (+) True LOC120550772
TU283091 other upstream 476024 1466018 ~ 1571837 (+) True G208911
TU282870 other upstream 554680 1430509 ~ 1493181 (+) False G208777
TU283035 other upstream 842613 1204590 ~ 1205248 (+) True G208867
TU283626 other downstream 237460 2332178 ~ 2334285 (+) True G209284
TU283630 other downstream 249563 2344281 ~ 2360302 (+) False LOC120551576
TU283706 other downstream 620927 2715645 ~ 2797135 (+) True G209344
TU283708 other downstream 685023 2779741 ~ 2833674 (+) False G209344
TU283964 other downstream 1551291 3646009 ~ 3646997 (+) True G209514

Expression Profile