RNA id: TU283772


Basic Information

Item Value
RNA id TU283772
length 580
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G209382
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 3110699 ~ 3201134 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agacctacaaccaatcagagcgacagatagacctacaaccaatcagagcaacagatagacctacaaccaatcagagcgacagatagacctacaaccaatcagagcgacggatagacctacaaccaatcagagcgacggatagacctacaaccaatcagagcaacagatagacctacaaccaatcagagcaacagatagacctacaaccaatcagagcgacagatagacctacaaccaatcagagcaacagatagacctacaaccaatcagagcgacggatagacctacaaccaatcagagcgacggatagacctacaaccaatcagagcaacagatagacctacaaccaatcagagcaacgaatagacctacaaccaatcagagcaacggacagacctacaaccaatcagagcaacagatagacctacaaccaatcagagcaacagatagacctacaaccaatcagagcaacggatagacctacaaccaatcagagcaacagatagacctacaaccaatcagagcaacagatagacccacaaccaatcagagcaacaaatagacctacaaccaatcagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283762 lncRNA upstream 190087 2943396 ~ 3010412 (+) True G209375
TU283761 lncRNA upstream 276229 2923985 ~ 2924270 (+) True G209374
TU283758 lncRNA upstream 291983 2908054 ~ 2908516 (+) True G209372
TU283715 lncRNA upstream 366825 2831287 ~ 2833674 (+) False G209344
TU283747 lncRNA upstream 383751 2816427 ~ 2816748 (+) True G209363
TU283947 lncRNA downstream 146764 3347898 ~ 3348100 (+) True G209501
TU283954 lncRNA downstream 267878 3469012 ~ 3523766 (+) True G209508
XR_005637751.1 lncRNA downstream 586839 3787973 ~ 3790675 (+) True LOC120550570
XR_005637748.1 lncRNA downstream 588312 3789446 ~ 3790675 (+) False LOC120550570
XR_005637749.1 lncRNA downstream 588312 3789446 ~ 3790397 (+) False LOC120550570
XM_039788750.1 mRNA upstream 667036 2526662 ~ 2533463 (+) True LOC120551356
XM_039789064.1 mRNA upstream 838140 2344346 ~ 2362359 (+) True LOC120551576
XM_039788394.1 mRNA upstream 888050 2302291 ~ 2312449 (+) True LOC120551177
XM_039789062.1 mRNA upstream 901695 2277900 ~ 2298804 (+) True LOC120551574
XM_039789061.1 mRNA upstream 1193954 1992977 ~ 2006545 (+) True LOC120551573
XM_039789069.1 mRNA downstream 385945 3587079 ~ 3621179 (+) True LOC120551583
XM_039789071.1 mRNA downstream 469456 3670590 ~ 3687777 (+) True LOC120551587
XM_039787170.1 mRNA downstream 628181 3829315 ~ 3832201 (+) True LOC120550572
XM_039789000.1 mRNA downstream 741247 3942381 ~ 3943422 (+) True atoh1c
XM_039788724.1 mRNA downstream 797239 3998373 ~ 4028282 (+) False LOC120551345
TU283708 other upstream 366825 2779741 ~ 2833674 (+) False G209344
TU283706 other upstream 403364 2715645 ~ 2797135 (+) True G209344
TU283630 other upstream 840197 2344281 ~ 2360302 (+) False LOC120551576
TU283626 other upstream 866214 2332178 ~ 2334285 (+) True G209284
XR_005637782.1 other upstream 1586761 1594481 ~ 1613738 (+) False LOC120550774
TU283964 other downstream 444875 3646009 ~ 3646997 (+) True G209514
TU283994 other downstream 617719 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other downstream 620765 3821899 ~ 3823251 (+) False LOC120550571
XR_005637866.1 other downstream 797239 3998373 ~ 4027498 (+) False LOC120551345
XR_005637777.1 other downstream 2390202 5591336 ~ 5687896 (+) False LOC120550763

Expression Profile