RNA id: TU284577



Basic Information


Item Value
RNA id TU284577
length 226
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G210006
representative True

Chromosome Information


Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 5113161 ~ 5113386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGGAAGCGTCCGAACCACATGCAGAGGATGACCAGGTGATGGGGGAGCCAGCAGAGGCAGAAGAGAGCGGCGACGACGATGATCATCTTGGTGACTTTCCGCTTGGACCGCCTCGACTCGGACATGTCCTTCACGGGGTCCACGCTGGTCCACAGGTATCGGATGGTGCGAGCATAGGTGAGGCCAAGAACCAGCACGGGGAGGAGGTAGCCAAAGATGAAGGTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU284528 lncRNA upstream 50505 5062363 ~ 5062656 (+) True G209968
TU284478 lncRNA upstream 83137 4975929 ~ 5030024 (+) True G209931
TU284479 lncRNA upstream 83370 5029327 ~ 5029791 (+) False G209931
TU284452 lncRNA upstream 208855 4904098 ~ 4904306 (+) True G209906
TU284451 lncRNA upstream 212164 4900770 ~ 4900997 (+) True G209905
TU284597 lncRNA downstream 29229 5142615 ~ 5220624 (+) True G210020
TU284603 lncRNA downstream 78613 5191999 ~ 5192806 (+) True G210026
TU284604 lncRNA downstream 82869 5196255 ~ 5196603 (+) True G210027
TU284612 lncRNA downstream 110654 5224040 ~ 5229881 (+) True G210030
TU284655 lncRNA downstream 234718 5348104 ~ 5376130 (+) True G210070
XM_039787503.1 mRNA upstream 6674 5079945 ~ 5106487 (+) False exoc7
XM_039787493.1 mRNA upstream 6674 5079945 ~ 5106487 (+) False exoc7
XM_039787502.1 mRNA upstream 6674 5079945 ~ 5106487 (+) True exoc7
XM_039787491.1 mRNA upstream 6674 5079946 ~ 5106487 (+) False exoc7
XM_039787495.1 mRNA upstream 6674 5079946 ~ 5106487 (+) False exoc7
XM_039789233.1 mRNA downstream 6703 5120089 ~ 5123604 (+) True LOC120551710
XM_039788623.1 mRNA downstream 33226 5146612 ~ 5187662 (+) False ccr10
XM_039788625.1 mRNA downstream 65399 5178785 ~ 5187662 (+) False ccr10
XM_039788626.1 mRNA downstream 65399 5178785 ~ 5187662 (+) False ccr10
XM_039788624.1 mRNA downstream 71201 5184587 ~ 5187662 (+) False ccr10
XR_005637866.1 other upstream 1085663 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 1289910 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other upstream 1289910 3821899 ~ 3823251 (+) False LOC120550571
TU283964 other upstream 1466164 3646009 ~ 3646997 (+) True G209514
TU283708 other upstream 2279487 2779741 ~ 2833674 (+) False G209344
XR_005637777.1 other downstream 477950 5591336 ~ 5687896 (+) False LOC120550763
XR_005637869.1 other downstream 970049 6083435 ~ 6092738 (+) False kctd2
TU284934 other downstream 1357270 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 2944357 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 3086179 8199565 ~ 8199679 (+) True LOC120551817

Expression Profile