RNA id: TU284664



Basic Information


Item Value
RNA id TU284664
length 875
lncRNA type inter_gene
GC content 0.52
exon number 6
gene id G210077
representative False

Chromosome Information


Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 5461998 ~ 5567878 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ttattacacacacacacacacacacacgcccacacacacaagcagcacaGGCTTGAACCCCAAGAGAGTACTGACGAGGGCAGAAAGCAGGAGGAGGgatggggggggtggggggagggaggCGGGGGAATGAAGGAAGTTCTTGAAAGAAAGCGCTGGGTTTGGGAAATCGGGTTAGATGGGAgcgaaaaagggggggggggcctggTTCCGTGTGCCGGCCGGtgttgaaacagaaaaaaataaacatcaaacaaaaatcaaaacTGGTGGAATGGATCATTTCTGGTTCTTGAGCTGGTTGGAGAGCCAGTCCAGGCCCTCGTACAGGCCGTCCCCGCTGGTGGCGCAGGTGGCCTGGATGTACCAGCTGCGCTGACGCAGGGCGTGCAGGCCCAGCTTGTCTGTGATCTCTGCAGCATTCATAGCGTTGGGGAGATCCtgTTATTTGCAAAAACGAGCAGCACAGCGTCTCTGAGTTCGTCCTCGGCGAGCATTCTGGACAACTCCTCCCTCGCCTCGTTCACTCTCTCCCGGTCGTTGCTGTCCACCACAAAGATGAGCCcTTGAGTGTTCTGGAAGTAGTGGCGCCACAGCGGCCTGATTTTGTCCTGACCGCCCACATCCCACACTGTGAAGCTGATGTTCTTGTATTCTACAGTTTCAACGTTAAAACCAATGGTGGGAATGGTGGTGACTATCTCTCCAAGCTTCAGTTTATATAAGATGGTTGTTTTTCCAGCAGCATCAAGCCCAACCATAAGAATCCTCATCTCCTTTTTGCCAAAAAGGCCTTTGAATAAGCTTGCAAATATATTCCCCATGGTGACGAAGCTTTAGAAAGACAGCTTCTCGATCTTTCCGTTATCTTTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU284672 lncRNA upstream 26284 5435049 ~ 5435714 (+) True G210081
TU284655 lncRNA upstream 85868 5348104 ~ 5376130 (+) True G210070
TU284657 lncRNA upstream 101190 5354441 ~ 5360808 (+) True G210072
TU284612 lncRNA upstream 232117 5224040 ~ 5229881 (+) True G210030
TU284597 lncRNA upstream 241374 5142615 ~ 5220624 (+) True G210020
TU284701 lncRNA downstream 45499 5525256 ~ 5525645 (+) True G210109
TU284747 lncRNA downstream 138169 5617926 ~ 5618412 (+) True G210142
TU284762 lncRNA downstream 277295 5757052 ~ 5844758 (+) True G210155
TU284766 lncRNA downstream 284639 5764396 ~ 5777729 (+) True G210158
TU284769 lncRNA downstream 291310 5771067 ~ 5774515 (+) True LOC120550769
XM_039789282.1 mRNA upstream 212240 5198751 ~ 5249758 (+) True fmnl1b
XM_039788625.1 mRNA upstream 274336 5178785 ~ 5187662 (+) False ccr10
XM_039787563.1 mRNA downstream 111578 5591335 ~ 5687896 (+) False LOC120550763
XM_039787562.1 mRNA downstream 111579 5591336 ~ 5687896 (+) True LOC120550763
XM_039787565.1 mRNA downstream 120796 5600553 ~ 5687896 (+) False LOC120550763
XM_039787567.1 mRNA downstream 223588 5703345 ~ 5741047 (+) False LOC120550764
XM_039787566.1 mRNA downstream 227603 5707360 ~ 5741047 (+) True LOC120550764
XR_005637866.1 other upstream 1434500 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 1638747 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other upstream 1638747 3821899 ~ 3823251 (+) False LOC120550571
TU283964 other upstream 1815001 3646009 ~ 3646997 (+) True G209514
TU283708 other upstream 2628324 2779741 ~ 2833674 (+) False G209344
XR_005637777.1 other downstream 111579 5591336 ~ 5687896 (+) False LOC120550763
XR_005637869.1 other downstream 603678 6083435 ~ 6092738 (+) False kctd2
TU284934 other downstream 990899 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 2577986 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 2719808 8199565 ~ 8199679 (+) True LOC120551817

Expression Profile