RNA id: TU284789


Basic Information

Item Value
RNA id TU284789
length 1526
lncRNA type read_through
GC content 0.51
exon number 4
gene id LOC120551158
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 5815236 ~ 6259659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCGGCATATCTGTGAGCCAATGAAATCACTGATTCATGATTGAACATCAGTACAGTGCGTTGATAGTGGCCCATTTTAATAAATCTCCATTTCAGAAATACAATTCAATAAGTTTATTTCACACTAGTCAGAATCAGTAGTAGGCTTACACTCATTGTGAGAAAGTACACGTGAATGTTCCCAAGAGACTTCATAAACCGTGAAGTTGCACTGAAGTTCCTGAAATACAAAAAAGGCAAACAATTAGTGCATCATGGTAAACATTTGACATCGATGTATTGGGGCAGACAAGTATTGGGCTTTAAGGTGCGTTTTTCAGAGTTTCATGAACGACCTGAAATCTTAAACTTGCCTTGGGTTCAGAGTTGAAGTCACATGTTTGGTAATCAGCGGCAACGTTCTCGCTAGCAGCAGCGGCGGCAGTGGTGGCGCCGTTCCCGCCAGCAGCATAGGTGGTGCCGTTCCCGCCAGCAGCGTTCTCGCTATCAGCAGCGGTGCCGTTCCCGCTATCAATGGCGGCGGTGCCGTTCCCGCTGTCAGCATAGGTGGTGCCGTTCTCGCCAGCAGCATAGGTGGTGCCGTTCCCGCCATCACCGGCGGTGGTTGTGCCGTTCCCGCTATCAGCATAGGTGGTGCCGTTCTCGCCAGCAGCATAGGTCGTGCCGTTCTCGCCAGCAGCATAGGTGGTGCCGTTCCCGCCATCACCGGCGGTGGTTGTGCCGTTCCCGCTATCAGCATAGGTGGTGCCGTTCTCGCCAGCAGCATAGGTCGTGCCGTTCTCGCCAGCAGCATAGGTCGTGCCGTTCCCGCTATCACCGGCGGTGGTTGTGCCGTTCCCGCTATCAGCATAGGTGGTGCCGTTCTCGCCAGCAGCATAGGTCGTGCCGTTCTCGCCAGCAGCATAGGTGGTGCCGTTCCCGCTATCACCGGCGGTGGTTGTGCCGTTCCCGCTATCAGCATAGGTGGTGCCGTTctcgccagcagcagcaccgcctGTCTTGCACGTTGTACGTCCCAGGGTCATTTCCAGGATGTAGCTCAATCCTTGGACAACCTAAAtTCAGCCGATGTTATATTCACAATTTCGTAATTAAACAGCTCTTCTGTGTTGGCTTTGTTGAATTCAGCCACAGCAAACCGTGCTGCGTCTAAAACATTAGGGTCGTTCACCAGGACTTCATATGAGGCACCGTCAATCGGAGATTGCTCGGTTACAAAGCGACCGGTCAAAGCACAAACGACAACACAAAGCCAGACAAACATCATGAACCAAACAAGTTGTTCTGCAGTAGCTATTAGGAGTCCTGTTATCGGTTCTGAGTGGCCTGGTTCCCCTTCACAGCCGAGTTAATATACTATGTAGagcaacatacacacacctgtTTCCTATCTGTCGATGAACACATGAACGTCTGAACTGAAAGGCCCTGAAcaccacacaggtgttttcagttaatctggctgattagacctcgtCCCAGGACTCTGTGGGTGTCTTTAGACTGACTGATCCTCATCTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284869 lncRNA upstream 28654 6201907 ~ 6203384 (+) True G210213
TU284864 lncRNA upstream 57824 6171567 ~ 6174214 (+) True G210209
TU284831 lncRNA upstream 134477 6072924 ~ 6097561 (+) True G210183
TU284837 lncRNA upstream 185544 6044505 ~ 6046494 (+) True G210185
TU284762 lncRNA upstream 387280 5757052 ~ 5844758 (+) True G210155
TU284805 lncRNA downstream 7594 6257967 ~ 6258929 (+) False LOC120551158
TU284874 lncRNA downstream 18263 6268636 ~ 6269822 (+) False LOC120551157
TU284899 lncRNA downstream 141764 6392137 ~ 6392573 (+) False stx4
TU284922 lncRNA downstream 197038 6447411 ~ 6484415 (+) True G210256
TU285144 lncRNA downstream 344896 6595269 ~ 6596781 (+) True G210431
XM_039788352.1 mRNA upstream 36015 6153708 ~ 6196023 (+) True acsf2
XM_039789142.1 mRNA upstream 81510 6138198 ~ 6150528 (+) True tap2t
XM_039788509.1 mRNA upstream 94025 6102549 ~ 6138013 (+) True LOC120551246
XM_039788508.1 mRNA upstream 94029 6123938 ~ 6138009 (+) True LOC120551245
XM_039788779.1 mRNA upstream 139300 6083102 ~ 6092738 (+) True kctd2
XM_039789174.1 mRNA downstream 127763 6378136 ~ 6392578 (+) True stx4
XM_039789172.1 mRNA downstream 127763 6378136 ~ 6392578 (+) False stx4
XM_039789175.1 mRNA downstream 130872 6381245 ~ 6391218 (+) False stx4
XM_039788339.1 mRNA downstream 211164 6461537 ~ 6465229 (+) True chmp2a
XM_039788340.1 mRNA downstream 222513 6472886 ~ 6474778 (+) True LOC120551142
XR_005637869.1 other upstream 139300 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 544142 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2204540 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 2408787 3818853 ~ 3823251 (+) True LOC120550571
TU284934 other downstream 220283 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 1807370 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1949192 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 2350805 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2792273 9042646 ~ 9046468 (+) False LOC120551795

Expression Profile