RNA id: TU284864


Basic Information

Item Value
RNA id TU284864
length 1544
lncRNA type intronic
GC content 0.37
exon number 2
gene id G210209
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6171567 ~ 6174214 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGTGAGCACTTCCAAAAGTCAAGGAAATAAAGATATTGAATATACATTAGATATACATAAAGtcaacagtcagtcagtctcagATTTTGTGTGCAAGAAATTCTTACAATTTAAATCAATGAAATGTTGAGAAAATGTTaagaatgttaaaaatattttgcatTAAAGTAAATCGAAAATAGCACAACACATACCATTAATCTCTTTTGACTTATTCATGTCTACATTCTTAGCTGAAGCACAAAAAAGGTAAATCCAGTTTCAAAGATCCTTGGAGTGTTAAAATACCTTCATATGGGGAAAATGGCACGAAAAGAAAGGCAGATACAATTTGTAAATTGCCTCCTATGATTCACCAAATAATACCCTACATCTTCAAAGTCTTATTGTCTCTTAAACTTCTTGGAGAAATAAGTCTTCCTCTACGGTTCGTGCTTTTTGTGGTCACTTTCTCGGTTTTCTCAGTCAGTGAGGGTGTAAGACTGACATCACAAAGTAGAAAAGAGGGTAAGCGAGTGTTGGAGGATGTATTTCTCTGCCTCTTTATCTTTTTTGGAGCCATAGTTGATTCATTGTTTATAAAGGTAACCACCAAAATAAAGGAGACTTCATGTCCAGtatattaaagctgcactaatcataATTTTTGTCTATCAATGATGGATCAAGTGACTGTGTGTAAAGAGTTCACTTGAATTCTTTTATGGATTAAATTTACAATATATAACGTGTAAATTAGTgtgctttagaggtgctggtaagTTGGAcataggctagctgtttccccctgtttccagtctttgtgctaagctaagctaactggctgctggtaGCTTCAAGACCTTGATCTTGAAGAGTGGTATAGATCTTCTCATATCTCTCTAAGTTTAAGCATAATttcccccaaaatgtcaaacattccCTTTAAGCTCATCTGGTTTGAGTTTACATTATTGTCATGCTCATCAAGAATTTTAAACTTAGAAGAGAACTTTCTCCTCAGGGAAGAGCATTCAGACTTTTTGTATTCATTGTTCTCTGAGATCCTGAACGCACCAGGAAAACACAACATATTTGCCCTTAATGCTTTTTGTAGCCTTCATTTACTCAAACTGCGCCCTTTGTTTGGGGGTTACTTTAATTTTGCACTTTTCCACTTCAAATTTAAGTCTTTAtctataatataaataaatgaaaattaagCTCTTGATGTGTTTGGGtgtgagagaaacagacagagacagaagtgTATTTATGAATGTGTTTGTTGACACAAGTGACAATATTTGACGGATGAATAGATGGACAGTCTTGAAGTAGAATGAGTTAGCATTGCTTTTCGTTGCATGTGTAGCCAGTCACCTGGACAGGCTCCTCCTCGGCATCTCCTGTACAGCTGCGTGTTCAATGACGTGTGCCCTTTTTGGCTCTCTTTGACTTGACTTTGCAGCCGCTGAAGGCGGCGCTGTCTCTCACTTGCTTTCCTTTCTGCTGAGGTGGAGATGCACACACTGCATCTGGACGATTGCGGCTAGAGTCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284831 lncRNA upstream 74006 6072924 ~ 6097561 (+) True G210183
TU284837 lncRNA upstream 125073 6044505 ~ 6046494 (+) True G210185
TU284762 lncRNA upstream 326809 5757052 ~ 5844758 (+) True G210155
TU284869 lncRNA downstream 27693 6201907 ~ 6203384 (+) True G210213
TU284787 lncRNA downstream 51456 6225670 ~ 6232855 (+) False LOC120551158
TU284799 lncRNA downstream 51456 6225670 ~ 6232855 (+) False LOC120551158
TU284780 lncRNA downstream 57824 6232038 ~ 6258479 (+) False LOC120551158
TU284789 lncRNA downstream 57824 6232038 ~ 6250373 (+) False LOC120551158
XM_039789142.1 mRNA upstream 21039 6138198 ~ 6150528 (+) True tap2t
XM_039788509.1 mRNA upstream 33554 6102549 ~ 6138013 (+) True LOC120551246
XM_039788508.1 mRNA upstream 33558 6123938 ~ 6138009 (+) True LOC120551245
XM_039788779.1 mRNA upstream 78829 6083102 ~ 6092738 (+) True kctd2
XM_039788606.1 mRNA upstream 128652 6025572 ~ 6042915 (+) True LOC120551300
XM_039788360.1 mRNA downstream 45655 6219869 ~ 6270445 (+) True LOC120551157
XM_039788359.1 mRNA downstream 45655 6219869 ~ 6270445 (+) False LOC120551157
XM_039788361.1 mRNA downstream 66880 6241094 ~ 6258906 (+) False LOC120551158
XM_039788363.1 mRNA downstream 66880 6241094 ~ 6258906 (+) False LOC120551158
XM_039788365.1 mRNA downstream 66880 6241094 ~ 6258906 (+) False LOC120551158
XR_005637869.1 other upstream 78829 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 483671 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2144069 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 2348316 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other upstream 2348316 3821899 ~ 3823251 (+) False LOC120550571
TU284934 other downstream 296442 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 1883529 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 2025351 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 2426964 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2868432 9042646 ~ 9046468 (+) False LOC120551795

Expression Profile