RNA id: XM_039788360.1


Basic Information

Item Value
RNA id XM_039788360.1
length 3085
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC120551157
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6219869 ~ 6270445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGACGTCAAACGCGTCTTGACCTActtgttgccatggtaactCACAGAGAGCGAAGGGGACCCCCCAACAATCTAGATTAGCTAAATTGAGCCATGGCTACTTCACAGAAAATCCAAAACTTTTCTTGGGGAAGAGGAGACTCAGAGGACGAGGAGAGCAGCAGGATGACCATGTTTGATGTGCTTCACGGGGAAATGAGAGAGAAGATCGTGCTACAGCGGCTGATAGTGATTGCTCGGCTCCCCCGCGGTCTTGCTGACAGGACAGAACTGGGAGGTCAGCCAGCAATTACCTTTAGAGCTACAAGGACCGAGAGCACAACAGCTCAGTGCAAGATAATTGCTATTCCACTGACAAGATCCCTTTATTCCAATCAATTATCTAACCACCCTTATTATGAAAAACTCAACTTTCAGCTAAGCAAACAGTATATATGGGATCATATGACGGGGCTGCTGTTAATTTATCCATCCTGTCTGCTGCATATCATTGAATCATCCAGGGAGGTTCTGGTTTCTGTTCTGAAAGACCTTAAAGACATGCAACAACAGCCAGACGGTACCTTGCTGGAAGCTGCCAAGGTTGTGTTCATGGCACATAACCCTCCAAGCAGGCTGTTCCAACAGTGGAGCTACAAGGTGCTCAATGCAGATCAGGGGGCGGAGGACTCTGTGACTAAGGGACCagatgaagaggaagagagcaCAGAGACTCTGGTTTGCACTGTCCTGTGTGCGCTGCAGAAACTGGGCGAACATCTTAAAATATCTAAGGCTGTTCCTGGGTCAGGGCTGGATACGTCTCCGGAGCTGATCGTCTCTCAGGAGGTTCTCAACAAACTTTTGGCTCGAGAGGAGCTCATGACTCCGCACCAACACCTCCAGATGTACAACTCACCGTTACACATCAGCATGGACTTTGGACAAGTCATGCGAAGCAGCTGCCTCACTACAGTTTAACACTTTGGACAAAAGGTCAAAGGATGTGTTTGACCTTCGCTAAAGCACCTTGGATGTGAATGAAGGCTTCCTAGCAGATAGAAATCACTGCGACAGTTTTATACCAACATTTAATAAACTGcagcacttctttttttttatgttcttcaatatctttctttctttttttccaaaattatttAATATATCAAATTTGTTTGAGTGAAATAACATTGAacacaatttatttaaaaagcacagaaaatccaagtaatataaaaacatttttaatagtTTCAACATTCGGATGAGgttaattttatttctatcttaCTGTACACTGTGTTCCACTTGGTGACTGGGAGATAGCATGTCCAAGAAAAGGCATTTCCTCTTTACTCCAAACTTTAAAGAGTCCACAGTGTCACGACAGTTTGACACAAAGAACTTTTAAGTCTAAAAAGTTTCCTTGATCACTCATGtgttccctttttattttggcCCCCATTACTTGGAACTTAAActtaagcaacaacaaaaaaagatgacTGGAGATGTACTTGCAATGGCTGCATGCACCACAGTGTATTCTACAAACTGTACGAGGAAAAAGCAAACCTGTACGCTTTTGTCTTGTTTGCTGTAGGATTTTCAGTGTAAAGTCACAGGAACTTTTCAAGCTATTTGAAGTCCTTAAAAAGCGCATTGATTTCCTGACATTGTTCTCTGTTCGGAGCCAGATGTGCTTTTCTTatttgctatatatatataaaaagggtGAAACGTACTGTATCAATGGAACACAGAAGATACATGGTGAAAAAAGCAGTAAATCATGAATGTTTTAAACAAACCGTTGGCAGAGTCGATGGAGAGTTGGACTAAAAAAGGCCGAGGGCAGAACtgaattcttcttcttttataaAGGTCAATCTGTTtgcttataaaaaataaatacaagcaCATTTATAGAGGACCAAAGATGAGACATATTTCATAGGCATGGTTAAAAAGCATGCTGCTGAGTTTCACACAGGACAATGTCGAATCAAACACCCCCTCgactcccctccctccctccctaaaCTTGGTCATAACACTCTTTTTATCAAATACCCCACCACCGTCTTCTACTTGAAACTAtgtccacaacacacacaatccacCTTCATCACGAGCGATGAGGTGAACGTCGTCTATCACCGATACATTCCACCtattcatgtaaaaaaaaaggccttcGTATTTTAGTGCTCAAAGGTCATGCTTGCAAAAGCTGTAATACTGGAAACTGTCTCTGGAATCTCTCTCCCGACTGTCTCTGCTCGACAGGGCTATTGTTAATAAAGTTGTGTTTGACGAATACTGTATGTACAAGCCTTATTTTAAACCCTTTAGTACAAAACGAAGAGCAGCACATTGTAACACAGAAATCCAGACAAAGACAGGACAGACCATTCACCTCAGCACAGCCAAATTGCaacaataactttttttttataaactgttTTTTGGTCAACATAACgtgttttgcttctttttttttttttataattaaaatcaTAATACTGGTGATAGCATTTCATGCTGGGTTGATTTAAACTCAGCTGGATCGGTATGAACTAATCAGTATGAATTGCAGTAGAGCTGAAACGTTAAGTAGATTAAAAGGAAACTATTTGGATAATTGATTTATTCTTCTAATTGTTGAAGCAGAAACGACAGGCATGTATGTGGGCTATAGACCAGGCGATTAAAAAAATCATCAGCTGAttaattatgaaaataattaaaaagtcgCAGCCCTAAATTGTAGAAAAGATCCAAATTGTCCTGcagtttttctgctttttttttttgcatgttctAATTTTAACCTTTCATGCTTTATTGAGGAATTTTATGTACAAATGTACCGGTATGTGTTGCTGAACTGGTTCCAAACATGTAATCATAATGGCTTTAACTGACCCCACACAAAGGGACACAACGTACACTTCTTATTTTTTGGAAACACTGGAACAAATGTCTCTGTGTTTTAATCACTTTGATCTTAACGTGTAGAACTTTTGTGTCGTTgtgatatatattttataccgATATGGATctgtgtgtctgaaataaaGTTGAATTACGTTCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284869 lncRNA upstream 16485 6201907 ~ 6203384 (+) True G210213
TU284864 lncRNA upstream 45655 6171567 ~ 6174214 (+) True G210209
TU284831 lncRNA upstream 122308 6072924 ~ 6097561 (+) True G210183
TU284837 lncRNA upstream 173375 6044505 ~ 6046494 (+) True G210185
TU284762 lncRNA upstream 375111 5757052 ~ 5844758 (+) True G210155
TU284899 lncRNA downstream 121692 6392137 ~ 6392573 (+) False stx4
TU284922 lncRNA downstream 176966 6447411 ~ 6484415 (+) True G210256
TU285144 lncRNA downstream 324824 6595269 ~ 6596781 (+) True G210431
TU285167 lncRNA downstream 386084 6656529 ~ 6657157 (+) True G210444
TU285168 lncRNA downstream 389018 6659463 ~ 6662634 (+) True LOC120550868
XM_039788352.1 mRNA upstream 23846 6153708 ~ 6196023 (+) True acsf2
XM_039789142.1 mRNA upstream 69341 6138198 ~ 6150528 (+) True tap2t
XM_039788509.1 mRNA upstream 81856 6102549 ~ 6138013 (+) True LOC120551246
XM_039788508.1 mRNA upstream 81860 6123938 ~ 6138009 (+) True LOC120551245
XM_039788779.1 mRNA upstream 127131 6083102 ~ 6092738 (+) True kctd2
XM_039789174.1 mRNA downstream 107691 6378136 ~ 6392578 (+) True stx4
XM_039789172.1 mRNA downstream 107691 6378136 ~ 6392578 (+) False stx4
XM_039789175.1 mRNA downstream 110800 6381245 ~ 6391218 (+) False stx4
XM_039788339.1 mRNA downstream 191092 6461537 ~ 6465229 (+) True chmp2a
XM_039788340.1 mRNA downstream 202441 6472886 ~ 6474778 (+) True LOC120551142
XR_005637869.1 other upstream 127131 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 531973 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2192371 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 2396618 3818853 ~ 3823251 (+) True LOC120550571
TU284934 other downstream 200211 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 1787298 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1929120 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 2330733 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2772201 9042646 ~ 9046468 (+) False LOC120551795

Expression Profile