RNA id: XM_039789174.1


Basic Information

Item Value
RNA id XM_039789174.1
length 2227
RNA type mRNA
GC content 0.44
exon number 11
gene id stx4
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6378136 ~ 6392578 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCAATGTTTTGAAGAGCACCAGAAGAAGAAGCGTTGCTACTTGAGTTTATATGTTGAATGACTGTTGTTCGAAGTTTACAGTGTTTTTTACGGTTACTTTCTCTGCTTGGGAACAACTTACCACATTTCGCCGTAGAGTCGCATCGTTCCCTGACATCTGACCGGCTGCTTCGCGCTGAAAAATGCGGGACCGAACTAAGGAATTAGGAAATAATGCGGAGGCTTCCGATGAGGACGATGAGGGCAGAGCGCTCATGATCAAACCTGGAACCTCTTCAGccaaagaggagaaggagaatgaCGCCTTCTTTAAAAAGGTGCAAGAAATCCATGAGGGGCTGCAGAGTCTCAAAAAGATGGTGTCTAACCTGGAGAACAAACAGAGAACTGTGCTGGGGGTGGCGCTGCCGGAGGAGAGTATGAAGAAAGAGCTCCAGACGCTCCGAGACGAGATCAAAACGTCGGCCAGTCAGATCCAGAGAAAACTCAAGAGTATTGAACCGAAGAAGGGAGAGGAGGATGGAAAATATATACCCGTAAACATTCGGATGCAACGGACCCAGCACGGCGTTCTGTCGAGGGAGTTTGTGGAGCTGATGGGGCGCTGTAACACCATCCAGGCCGAGTACAGAGACCGCAACGTGGAGCGAATACAGAGGCAACTCAAAATCACTGGGAACAACGTGACAGAAGAAGAGCTGGATGCGATGCTCGAGAGCGGGCAGACGGATGTTTTCACCCAAAATATCCTGATTGACGCTCAAGCTACGAGGCAGGCCCTGAATGAGATCGAGTCCCGGCACGACGAGATCCTGAAGCTGGAGAGGAGCATCCGAGACCTGCACGACATGTTCCAGTACCTCGCCATGGAGGTGGAGGCTCAGGGGGAGATGGTGAACCGGATTGAAACCAACATCAAATACTCGGCCGACTACGTGGAGAAAGCGAAGGAGAACACGGAGAAGGCGGTCACGTATCAGCAGAAAGCACGCAAGAAGAAGTTGTGGATAGCGATCTGTTGCgccatcctcctcctcatcctaatcatttcattggtcaccACCTTCGGCACCTAACACCAGGCAGTaagaaatGTGCTTTTAACTCCCAAATGACTACAATCTCGCCTGCATTTCCACTTCCACTGAAGAGGCAGCGCTGCTGGTTTATGGAAACCCCGCCCGGTCACATTCTGGTCTGCAACACAAAGACCAGGACGGTTTGTGAACTGTTACGTCACTGCTCCATCACCTCCTacattataaaaagaaaaaaaaaagaggaaataagTGGCCTTGAGCAAAGCACAACGCAGTATTGAAACCCCACACTGGCGCTGATTATACTGTACTCAGGAAACTGTGTTGAATATTGTTACGTTGTCCTTTCTGGATGAATTGGAGGCTAAATAACAATTTTAATAGATTAGAGATTTCTTTTATAGGCAGATAGACTAATATAATTGTACATAACCTATATTGCTGGTGATTATGACATTCTTtgaggatatttttttttaaacttgaaagTTGTTTTGACTGCCTACATGTAACAAGTGTAAatatagattattttttttgtgtttgttgaatAACATTACCCcccctttttattttacaaaggtGTCTCAGCACTGCTATAAAAGGCCCAAGGCCCACTTATTTGTCCTACCGCTTAGTATTTATGATTTAAAACAGTTGTGTATGCTGCTGCTATGAGAAAAGTTCAGCaaccacacttttttttttttttttttaaatcacgacTGTGCCTCCTCCTTTATGTCCATGTGAGAATGTAATGTTGTGCATTAACATTGTCAAGAAGGGATGaagtgagtttttatttttgcttatttgtttaaattcacACAGCAATGTTTCAGCTGCAAGTCCTCACTGCTTAGCCTGACACACACTCTTATTAGACTCTCTTCACCGGTTTGTCACATTGTGCAAAGCCTCCTTTTGTCTTGCTATAATTTGTTTAATTATGTGGGGAAATCCTGGAGCAGTAAAAACATTTAAGGAGGCAAAAGGTGCCCGTTCTGCAGCACTACGTGACAAAtctgtaaagaaaaacaaaccaaaacttATGTGAATTGTCCTTTTTGAGGCAGAAAGAGGTTGACGCAGAGCAGTGACTTTCCTGTGTAATATTACGCCTGTTGAATTTTGCATCTCATTTATTTTAAtgggtttttaaaataaaatactgccATCTAA

Function

GO: NA

KEGG:

id description
K13502 STX4; syntaxin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284874 lncRNA upstream 108314 6268636 ~ 6269822 (+) False LOC120551157
TU284781 lncRNA upstream 118477 5815236 ~ 6259659 (+) False LOC120551158
TU284783 lncRNA upstream 118477 5815236 ~ 6259659 (+) False LOC120551158
TU284785 lncRNA upstream 118477 5815236 ~ 6259659 (+) False LOC120551158
TU284791 lncRNA upstream 118477 6232038 ~ 6259659 (+) False LOC120551158
TU284922 lncRNA downstream 54833 6447411 ~ 6484415 (+) True G210256
TU285144 lncRNA downstream 202691 6595269 ~ 6596781 (+) True G210431
TU285167 lncRNA downstream 263951 6656529 ~ 6657157 (+) True G210444
TU285168 lncRNA downstream 266885 6659463 ~ 6662634 (+) True LOC120550868
XR_005637796.1 lncRNA downstream 267001 6659579 ~ 6662485 (+) False LOC120550868
XM_039788360.1 mRNA upstream 107691 6219869 ~ 6270445 (+) True LOC120551157
XM_039788359.1 mRNA upstream 107691 6219869 ~ 6270445 (+) False LOC120551157
XM_039788361.1 mRNA upstream 119230 6241094 ~ 6258906 (+) False LOC120551158
XM_039788363.1 mRNA upstream 119230 6241094 ~ 6258906 (+) False LOC120551158
XM_039788365.1 mRNA upstream 119230 6241094 ~ 6258906 (+) False LOC120551158
XM_039788339.1 mRNA downstream 68959 6461537 ~ 6465229 (+) True chmp2a
XM_039788340.1 mRNA downstream 80308 6472886 ~ 6474778 (+) True LOC120551142
XM_039788341.1 mRNA downstream 80974 6473552 ~ 6474833 (+) False LOC120551142
XM_039788305.1 mRNA downstream 83422 6476000 ~ 6482569 (+) True snf8
XM_039788128.1 mRNA downstream 101120 6493698 ~ 6510384 (+) True ttll6
XR_005637869.1 other upstream 285398 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 690240 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2350638 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 2554885 3818853 ~ 3823251 (+) True LOC120550571
TU284934 other downstream 78078 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 1665165 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1806987 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 2208600 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2650068 9042646 ~ 9046468 (+) False LOC120551795

Expression Profile