RNA id: TU284922


Basic Information

Item Value
RNA id TU284922
length 1468
lncRNA type read_through
GC content 0.43
exon number 2
gene id G210256
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6447411 ~ 6484415 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcattttcaggttcataattgtatttagagGTTTGAAAGTGGCTTAATTTAGGCGtcgtctcgcattgccagacccagATCGCTGGAGTATGTGGTCAGATTCATtatcttgtttttcttctttggaTGGATAGTTCCCGATTTAAATCAGAAGTCTGCAATCTTTCTACAAAACAAAGGAAGGAATGGGCTCTACTCAACTTTATATTTAGTGTCCTGACTTCCTTTGGGGGCTACATGTACCACCCAGGAGCAAAAGTCCAAAGCGATCACACATTTGCatctttttattaaattactGGCAACACTTCACACACGTTTGACTTCCTAACATTAGGCGAACCTCACCGTGGAGGTCAGGAGAGTTGTGGCGGTGGAGGGGTGAAGATAAGGTCAATATAATCACTGGTCCACACACTGAGGAAGGCAGAACCAGAGACATTTGTATGTCATGGACTGTTGCCAGTCATTTAATTATATTTGTGAACGCTTGCCTAATTCAACAAGCCAACTTTAGACTATTTTGTTCAGGCAAAATATGTCTGcttgcatttaaaaaacacttaaagTCTTAAAACATTTCAAACGATGCCCAGTTGTGTGGTAATTTACTTTTAAATACATTAACGTGCAACACTAAGATAACATTTGACTAAAATAAATGAGGACATGATGTCCACTGTGATGGATTACATACTGCAACTCAAGGCAGGTTTCATGTCTCtgccagcagattctttgtgcaTGATGGACACTAATGGCtgaacccccacccccaaaaataaaaacttcagTATGCTTTGGAAAACGAGGCAACTGTAATATGATGTAATTTGCAGTAAAAGTGTGCAACAATATCCGTGCGGTCCTTTTCCACATGACCACCCAACTTAAGACGTTAATTCTCCAGACGTATGAATCGTACGTGCGGTTCTCACAGCTCGTGGCCGTAGACGTGATCCTCAAACACGGACTGCTCCATGTTGTCGCAGATCATCGTGCAGAAGGGACACACTCGGTGGCTCTGCTCGTGCTGCTCCAGTTCGTTTTGGGTTATGCAGGGGAAGCACTCTTGGCAGTGACGACACACCAGCGCCTGCTGCGAGCAGAAATAGAGACGGCGAGTCAGAAGACGTAACAAAATAGGGAGCGGATTATGTTTTGAGTCCTCTACGAAAATATAAATGGTAAACAGCCGAGTCACACTCGGGCTCATGTGTGACTATCCAGGGACCAGGGGAGGTGGGCAGGTTTTCTCATGCACGTGTTTTGGAGTTGAGTTGAGTTAAGGAAGCATTGCATCCAGCTTCCTTAACCTAAAGTGTGTTTCAATACTAGTTCATTCAGGTTGTGTTAAATTACTAGCTGGCACTGCTACAAGTTTCCATTTGCTACTATGTATTCCTAGTGTCAGAAGTATGTGATATGGGCTTCTTCGCAGATGGGGCTCGGTATCGCTTGATTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284899 lncRNA upstream 54838 6392137 ~ 6392573 (+) False stx4
TU284874 lncRNA upstream 177589 6268636 ~ 6269822 (+) False LOC120551157
TU284804 lncRNA upstream 187752 6232038 ~ 6259659 (+) False LOC120551158
TU285144 lncRNA downstream 110854 6595269 ~ 6596781 (+) True G210431
TU285167 lncRNA downstream 172114 6656529 ~ 6657157 (+) True G210444
TU285168 lncRNA downstream 175048 6659463 ~ 6662634 (+) True LOC120550868
XR_005637796.1 lncRNA downstream 175164 6659579 ~ 6662485 (+) False LOC120550868
TU285174 lncRNA downstream 235822 6720237 ~ 6812972 (+) False G210449
XM_039789174.1 mRNA upstream 54833 6378136 ~ 6392578 (+) True stx4
XM_039789172.1 mRNA upstream 54833 6378136 ~ 6392578 (+) False stx4
XM_039789175.1 mRNA upstream 56193 6381245 ~ 6391218 (+) False stx4
XM_039788363.1 mRNA upstream 188505 6241094 ~ 6258906 (+) False LOC120551158
XM_039788128.1 mRNA downstream 9283 6493698 ~ 6510384 (+) True ttll6
XM_039788129.1 mRNA downstream 14763 6499178 ~ 6510384 (+) False ttll6
XM_039788140.1 mRNA downstream 30806 6515221 ~ 6517872 (+) False hoxb6b
XM_039788139.1 mRNA downstream 30807 6515222 ~ 6517872 (+) True hoxb6b
XM_039788135.1 mRNA downstream 33959 6518374 ~ 6520649 (+) True hoxb5b
XR_005637869.1 other upstream 354673 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 759515 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2419913 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 2624160 3818853 ~ 3823251 (+) True LOC120550571
TU285573 other downstream 1573328 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1715150 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 2116763 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2558231 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 3088700 9573115 ~ 9576418 (+) True rpl38

Expression Profile