RNA id: TU284934


Basic Information

Item Value
RNA id TU284934
length 1402
RNA type TUCP
GC content 0.46
exon number 2
gene id G210266
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6470656 ~ 6472155 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAATTTCAATTTCGGCTCCTAACGACcccaaaaacaatgtaatcgagaaaaacaactattttgcacattacgttttgcaagtaaactcttattttgtcttgtgttctgaatgacaaaTCGCACTTTCGCCCCTTCCGAAGACTCAACTCACTCAGccaacatttgaatatatttttttatattatttattttaaggggATTTCTAAAAGTTCaacaggaaaagtattaagggaaatttcacagtttaaggtgttttcacttttgatttattaaactgtttcaccattttttaagttcaataattgcaacatctttccaaaagtcaacaagtaatcctgttaaataaacgtgatttcaatattgaccaaaataattgtcatcgtgatttttttttcttccataatcaagcagccATAAAGTGTCAGGCCGTATTATCTCCTTTTCTGCATGAATTTCATTCCTGTGCGTTTGATTGAAAAGAATACGGCACATGAGAAAAGCCCAGTGCTTTCTGCTATTTACTTTACCTCTTTTGACCTTTGCCACCCCGACTGAAGGGGAGCGGAGTGGCTGTGTTGGGCTGTGTACTCTCCTCTACTTCCAGATCCCACATGTCCTCCTTGTCAGGGGTCCATGGCTCCAGGGGCTGGAAAAGGCGCTTGTCACGCGGAGGGTCCTTCTTTGTGAGCTGCAAGCGACGCTCCATGCGCTCAATACGTGCAAGCAGTGTCTCTTTGTCTGATTTGAGCTCATCTATCTCCTTGTCCTTGGACTGcagctgttgttgctgttgttcaATAAGGTCCAATTGGAGGAGGAGAATCTGCCGGAGGCAGTTGGCCTGTGTGTGGGGATTGGCAGGGGTCTTCCTGATGTTCCTCCACTTGCCCTCAGAGGAGAGTTCAATGGATGCAGTGCCAAGGACTCCTGGGACAACCCCCTTTGCACTGTCATCCGCAACTCCATCCTTGGGGTTATTGTTTAGAGCCATCTGAGGGTTATCCATATTGTCAGCAGAGAGGGGTTTACCTTTCACTGGGGTTCCCTCACCCCCCATTTGTCTGACAGGGGACAATATCCCCACAGTTTTATTGTCTTCTGCAACTGTGGCCGCCAGGGAAACTTTGCTTGTCATGTAATTCTGGCCTAAGTCCTTTGATTTGCTCGGGATCTCGCCCCCGTGTGCGTTTTGAACATCTATAACAAAGTCGCAGGACTCCCTCTTGAGGCTCACGGGTCCCACGGTGGCGACCCCAAACTGCGTTTGGTCAAAGTCGTTGGTGTCAGCGTCCTGCTTGAATCCTGTGTTGGGAAACAGTGTGGACCTCAGAGTCATGGCGAACACGACGACTGTTCATCCTGCAGCGCCTCGGCGCTGCATTTCAACCACAGCTTCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284899 lncRNA upstream 78083 6392137 ~ 6392573 (+) False stx4
TU284874 lncRNA upstream 200834 6268636 ~ 6269822 (+) False LOC120551157
TU284781 lncRNA upstream 210997 5815236 ~ 6259659 (+) False LOC120551158
TU284783 lncRNA upstream 210997 5815236 ~ 6259659 (+) False LOC120551158
TU284785 lncRNA upstream 210997 5815236 ~ 6259659 (+) False LOC120551158
TU285144 lncRNA downstream 123114 6595269 ~ 6596781 (+) True G210431
TU285167 lncRNA downstream 184374 6656529 ~ 6657157 (+) True G210444
TU285168 lncRNA downstream 187308 6659463 ~ 6662634 (+) True LOC120550868
XR_005637796.1 lncRNA downstream 187424 6659579 ~ 6662485 (+) False LOC120550868
TU285174 lncRNA downstream 248082 6720237 ~ 6812972 (+) False G210449
XM_039788339.1 mRNA upstream 5427 6461537 ~ 6465229 (+) True chmp2a
XM_039789174.1 mRNA upstream 78078 6378136 ~ 6392578 (+) True stx4
XM_039789172.1 mRNA upstream 78078 6378136 ~ 6392578 (+) False stx4
XM_039789175.1 mRNA upstream 79438 6381245 ~ 6391218 (+) False stx4
XM_039788360.1 mRNA upstream 200211 6219869 ~ 6270445 (+) True LOC120551157
XM_039788340.1 mRNA downstream 731 6472886 ~ 6474778 (+) True LOC120551142
XM_039788341.1 mRNA downstream 1397 6473552 ~ 6474833 (+) False LOC120551142
XM_039788305.1 mRNA downstream 3845 6476000 ~ 6482569 (+) True snf8
XM_039788128.1 mRNA downstream 21543 6493698 ~ 6510384 (+) True ttll6
XM_039788129.1 mRNA downstream 27023 6499178 ~ 6510384 (+) False ttll6
XR_005637869.1 other upstream 377918 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 782760 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2443158 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 2647405 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other upstream 2647405 3821899 ~ 3823251 (+) False LOC120550571
TU285573 other downstream 1585588 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1727410 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 2129023 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2570491 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 3100960 9573115 ~ 9576418 (+) True rpl38

Expression Profile