RNA id: TU285144


Basic Information

Item Value
RNA id TU285144
length 386
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G210431
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6595269 ~ 6596781 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAAGACATGTGAAGACATCAATTTTAGCTGTGTGTAACAGGCAATTTTCAGACATTGTACTGATAGAATGATAACCATTGATAATGAAagttatagacctttttcacggcagacatgttgacatgtcatagtaggaaaagcacaggtgtatttaaaaccattactgatggctgcattccacttaggagaggtccgggtattaaaccattactgatggctgcattccacttaggagagaccctggtattaaaccattactgatggctgcattccacttaggagaggtcctggtattaaaccattactgatggctgcattccacttaggagaggtcctggtattgtgcatgctgactcactgaaatatcttactgggacacttgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284922 lncRNA upstream 110854 6447411 ~ 6484415 (+) True G210256
TU284899 lncRNA upstream 202696 6392137 ~ 6392573 (+) False stx4
TU284874 lncRNA upstream 325447 6268636 ~ 6269822 (+) False LOC120551157
TU284805 lncRNA upstream 336340 6257967 ~ 6258929 (+) False LOC120551158
TU284795 lncRNA upstream 336790 6240737 ~ 6258479 (+) False LOC120551158
TU285167 lncRNA downstream 59748 6656529 ~ 6657157 (+) True G210444
TU285168 lncRNA downstream 62682 6659463 ~ 6662634 (+) True LOC120550868
XR_005637796.1 lncRNA downstream 62798 6659579 ~ 6662485 (+) False LOC120550868
TU285174 lncRNA downstream 123456 6720237 ~ 6812972 (+) False G210449
TU285173 lncRNA downstream 195700 6792481 ~ 6812972 (+) True G210449
XM_039788132.1 mRNA upstream 18019 6545528 ~ 6577250 (+) True skap1
XM_039788134.1 mRNA upstream 58886 6534815 ~ 6536383 (+) True hoxb1b
XM_039788138.1 mRNA upstream 61956 6525738 ~ 6533313 (+) True LOC120551032
XM_039788135.1 mRNA upstream 74620 6518374 ~ 6520649 (+) True hoxb5b
XM_039788136.1 mRNA upstream 74620 6518374 ~ 6520649 (+) False hoxb5b
XM_039789397.1 mRNA downstream 18942 6615723 ~ 6622031 (+) True prr15lb
XM_039787783.1 mRNA downstream 30937 6627718 ~ 6631943 (+) True mrpl10
XM_039787780.1 mRNA downstream 35516 6632297 ~ 6649790 (+) True osbpl7
XM_039787781.1 mRNA downstream 35516 6632297 ~ 6649790 (+) False osbpl7
XM_039787782.1 mRNA downstream 35516 6632297 ~ 6649790 (+) False osbpl7
TU284934 other upstream 123114 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 502531 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 907373 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2567771 3998373 ~ 4027498 (+) False LOC120551345
TU283994 other upstream 2772018 3818853 ~ 3823251 (+) True LOC120550571
TU285573 other downstream 1460962 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1602784 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 2004397 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2445865 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 2976334 9573115 ~ 9576418 (+) True rpl38

Expression Profile