RNA id: XR_005637796.1


Basic Information

Item Value
RNA id XR_005637796.1
length 514
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC120550868
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6659463 ~ 6662634 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGCCTGTTCCTGGCCAGCTCACCTGTCGTGCCTTTGTTGGATTTGTTTGCCTGTTCACACTGCCATCCTGTTGCCAACCATGAAAGCCCGTTCCTGACCATCAAGTGGAtaaactgcATGCTCATCTAATAATCACTTCAAAAAAAGGGATACCAAATGGAAGCGAAGAAAAAGACATGCTGCTGTGGTGCTGATCCGCCAGAACTACGTCCACATAGACGTTATAGTGAGCAGACGGATCCAGAACGCTGATGTTGAAGCTCAGGAAGGGGAACATCCTCCTGGAGAAACACACAGGGATaaacataattaataatttttcgAATATCATTTTGTCTGCAtgtatctttatttattttttgggaatTGCATCATCTTATGGCTAAAATTAGCAGGCCTcgacatttcaatatttttttgtgttgcctCAAATGTTAAAGTTGACAGTTGTTAAACACAATACAGCTGatggaaatgtaaaaaataaatttactAAAAATGTGAATAGCTGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285167 lncRNA upstream 2422 6656529 ~ 6657157 (+) True G210444
TU285144 lncRNA upstream 62798 6595269 ~ 6596781 (+) True G210431
TU284922 lncRNA upstream 175164 6447411 ~ 6484415 (+) True G210256
TU284899 lncRNA upstream 267006 6392137 ~ 6392573 (+) False stx4
TU284874 lncRNA upstream 389757 6268636 ~ 6269822 (+) False LOC120551157
TU285174 lncRNA downstream 57752 6720237 ~ 6812972 (+) False G210449
TU285173 lncRNA downstream 129996 6792481 ~ 6812972 (+) True G210449
TU285240 lncRNA downstream 277886 6940371 ~ 6941232 (+) True G210505
TU285265 lncRNA downstream 294910 6957395 ~ 6959615 (+) False psmd11b
TU285266 lncRNA downstream 297719 6960204 ~ 6960437 (+) True G210523
XM_039787780.1 mRNA upstream 9789 6632297 ~ 6649790 (+) True osbpl7
XM_039787781.1 mRNA upstream 9789 6632297 ~ 6649790 (+) False osbpl7
XM_039787782.1 mRNA upstream 9789 6632297 ~ 6649790 (+) False osbpl7
XM_039787783.1 mRNA upstream 27636 6627718 ~ 6631943 (+) True mrpl10
XM_039789397.1 mRNA upstream 37548 6615723 ~ 6622031 (+) True prr15lb
XM_039787940.1 mRNA downstream 140182 6802667 ~ 6811429 (+) True pdk2a
XM_039788246.1 mRNA downstream 156673 6819158 ~ 6936809 (+) True myo1d
XM_039788992.1 mRNA downstream 288582 6951067 ~ 6960076 (+) True psmd11b
XM_039788993.1 mRNA downstream 288582 6951067 ~ 6960076 (+) False psmd11b
XM_039788633.1 mRNA downstream 298754 6961239 ~ 6993088 (+) True LOC120551313
TU284934 other upstream 187424 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 566841 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 971683 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2632081 3998373 ~ 4027498 (+) False LOC120551345
TU283997 other upstream 2836328 3821899 ~ 3823251 (+) False LOC120550571
TU285573 other downstream 1395258 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1537080 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 1938693 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2380161 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 2910630 9573115 ~ 9576418 (+) True rpl38

Expression Profile