RNA id: TU285173


Basic Information

Item Value
RNA id TU285173
length 1442
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G210449
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 6720237 ~ 6812972 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGagttccaCTTACACTTCAGGGATGCAGCTCCAATGTTGCATCACGTGCAGGTCGAGACAGAGGCAGCACCCGGCATGTATCGGTGTGGTGTTGTGACGAAAAAAAGTgggaatatgcaaagtaacagGAGGGTTTAAATAGTCCAGGTTAAGACCCTAAACGTGCAGTAAAGTAATTACAGCAGACATTTGAGGAGCGACATATGGAGGTATTCAGTTGAACAGGGAGAGACCTGTTGTTGAACAATTGGAAGAGATCGTCCTGTAGGAAATGTCACCCAAGCCTTATTGTAGCAACTTCACCCAAAGGCTCCTTTTTATTGAAATGCTTGAAAGAATCTTAAATATTACTAATATTGAACCTTGTTAAAATTGTAAGTACTGTGTTACAGTTGAGTCTGCAGATTTGAACAAATGCATGACTTTTAAGTTCACTCAACTTAAAAGTCATACATTTGTTGTGCTTTCTGATATTTGATTTTGATGTTGCAGCACTTAAGGTATTCACGTTGACTGGTAAGATACAGTGTTATCTTAACATCAGTTTTTTTGGACCAGGCTGAATGTAATCCGCTCTCTTCTGtgcattaaaggtgccctgccacacctatttcattactttgtggtaatgtctgaagttctaccatggactctgtaacatttttttgtggaaaacatgccttggttaccttgtttcaagccattctagcgtggtatagaaagcctacaggaagactcagctcgatttctgccagttctcattaatattcaataagctaagctgtttgaatctgattggctaacagctagccaatgagagcctggctgtcagaatcctttacccagcgcaactgggcgagctaatgaatagtgatgagctcaggcagtatgatgtcagactgaccagcttttgtaattggcctgatttctccgcttatttctgttcagtgtctagagctgacagaggaggtagcagttcattttcacattcacaacataacacaaacacatatggacctaacatatttcaaaaaatgcaattaatattggttttgtatggcagggcaccttttaatttgtattaatGGCAGAGTCAGAGAGTATTACATAGGGCCCGTAGTTCTCTCTGGTATACCAGGTTTCACAGCCACCAGAAGATTTGGAGGTTTGATGCTTTTAGCTGAGTTCAATAGAGGCTTGTGTTATTAAACCCCAGAAGGTAGTGCATGCCATGTTTGAGTTCTCTACCAGTCTCCGATTGGTTATTACACTGTGCCATATGAGGAAAGAGTGTCCCATGACcatatgtgttttcttttttatcacattGATATTAACCATGCAGTAAGTTAAAGGTTATTTTTATAGCTACGCTTGTTGAGACTGAAATGTTTGTACAAAGTGTGActacaatatactgtaattaataataataataaa

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko05012 Parkinson disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285168 lncRNA upstream 129847 6659463 ~ 6662634 (+) True LOC120550868
XR_005637796.1 lncRNA upstream 129996 6659579 ~ 6662485 (+) False LOC120550868
TU285167 lncRNA upstream 135324 6656529 ~ 6657157 (+) True G210444
TU285144 lncRNA upstream 195700 6595269 ~ 6596781 (+) True G210431
TU284922 lncRNA upstream 308066 6447411 ~ 6484415 (+) True G210256
TU285240 lncRNA downstream 127399 6940371 ~ 6941232 (+) True G210505
TU285265 lncRNA downstream 144423 6957395 ~ 6959615 (+) False psmd11b
TU285266 lncRNA downstream 147232 6960204 ~ 6960437 (+) True G210523
TU285285 lncRNA downstream 224824 7037796 ~ 7041379 (+) False ormdl3
TU285296 lncRNA downstream 235492 7048464 ~ 7072516 (+) True G210544
XM_039787780.1 mRNA upstream 142691 6632297 ~ 6649790 (+) True osbpl7
XM_039787781.1 mRNA upstream 142691 6632297 ~ 6649790 (+) False osbpl7
XM_039787782.1 mRNA upstream 142691 6632297 ~ 6649790 (+) False osbpl7
XM_039787783.1 mRNA upstream 160538 6627718 ~ 6631943 (+) True mrpl10
XM_039789397.1 mRNA upstream 170450 6615723 ~ 6622031 (+) True prr15lb
XM_039788246.1 mRNA downstream 6186 6819158 ~ 6936809 (+) True myo1d
XM_039788992.1 mRNA downstream 138095 6951067 ~ 6960076 (+) True psmd11b
XM_039788993.1 mRNA downstream 138095 6951067 ~ 6960076 (+) False psmd11b
XM_039788633.1 mRNA downstream 148267 6961239 ~ 6993088 (+) True LOC120551313
XM_039788634.1 mRNA downstream 148602 6961574 ~ 6993088 (+) False LOC120551313
TU284934 other upstream 320326 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 699743 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 1104585 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 2764983 3998373 ~ 4027498 (+) False LOC120551345
TU283997 other upstream 2969230 3821899 ~ 3823251 (+) False LOC120550571
TU285573 other downstream 1244771 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1386593 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 1788206 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2229674 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 2760143 9573115 ~ 9576418 (+) True rpl38

Expression Profile