RNA id: TU285285


Basic Information

Item Value
RNA id TU285285
length 3430
lncRNA type sense_over
GC content 0.42
exon number 2
gene id ormdl3
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 7030818 ~ 7043208 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATACATGTGtatgatctttttttctttttttttaagcagtggAAGGCAGAAATGTCCATGAACCATTTCACCATGGCAGTTGATGTGAAGTAGTAAGTAGTTATGATATCCCATTTTAGGGAAACCGCAATTTGATTTAGTAATGATAAGCCAAAAAACGTATAGTCATTGAATGAATGTGATAACGGTTAAGATTACTTTAGTGTCTCCCATGGGAGAAAATTGTCTGGGTTGAGAAAGGGAGGTTGCTGCATCAAGACCTGACATCATAATAAAACCCATTTAAATAAGAACAAGTGCAAACATCCGCCTGAGATGAAACAACCAGCCAACTAACCAAAAGCCATTCACTCTGTTAGGAGCTACAGAAATATCCAAGGCATACATCTCACAGCATACACACTTGAGTAGATATGTTGTGAgcagtgttggggaagttacttttaagaagtagtgtttgctcgttacttcttaaaaaagtaatccatTACTTCACTTAGTTACCCcctatggaaagtaactttttactttactcgttacttttacgttacttttaaaagcgGTGcgtctctggcagagactgtagttaattatacaaaaactatctttgaccataaagccaatctctggtttatcagtgaagtgtctgaactacactgcagactggattctctactcacagagtgactgCTGATTCATTATGAACCAGTCCAGGGCGGGTTGAATGCACATCAACAGGTCATCAGCGTTAAACGGTGTTAAGGCTCTTATATactagacgcatccaaggtgccgcgcgccatcgtgacgtcaaaatgacgtaataTCTTGCCGGCGCGCCCGATTTATAGCACGCAAGCAGAGGGCATACacagctctttttttctttgacgaagtaggtcatcgaatcaaatcgaagaattgacggcaatgctgctgccagttctgccgttgttgacctttttcttctccttctaGTCCGTGGAAAGGGCAACGTTGGTAGCCtatgctcattagcgccaccgctgttcaggagaagactgcaactagtgtctcaagcaccagcgcgggtataaatagtcacggcgatcccatgacgtcacatttgcacGCGCCAGCTGGGCTGTATCTAGTATATAAGAGCCTTTAgtgtatgtaatgtctgtatccACTTGTACCGGTCGCGCAGCCACGATGGTCTGTGCATTGTCGTAGACATCCTTGCGTGTCCGTGCAACCACAGTCCACAGCGGTCTGCTGCGTGTATGTATAAGGCCATCTCCACCGCATCCATCTGTgaggttgtcagctttgtgtctgcctggctCAGAGCGCTGTCCAGCAAAAAGCCACAAAGCTTAAAAACGCTCTCAAAAGCTTGTGAGCGCGCAGCTGAGAAGGTAGCGTCgctgtcaaatctgtccctgggaaaagtaacctgaaaattgaaaaaggaactacgtttcgttaccaaattttcaGTAGTAGCGCGTTACACTACTTTCTACCCAGAAAAGTAGTTACGTTACTGTTGTTGCTGGTTGTGAGATGTATGCCTTGAATTTCTGTAGCTCTTAACCGAGTGAATGGCTTGTAAATATGTGGCTGGCTTTACCTCAGGCTGATGTTTGCATGTGTTcctatgtgttttattgttaaaaacaaaaccaaatcaacACATTAAACTATGTGTTAATTCTACACGATAATGgcagaattattttttaaacattatgctGCAATAAGGAGCAAAAAGTAACCGATCTGAAGATTCAATATTTTCTATCCTATATTGAAAAAGAATGAAATAATTtcccatatttaaaaaaaagaaaagaaaatatagcCATTGTAgcataaatattaatattactgACAGTGgcagtagtagtaatagtagacGACCAGTTTCATCTTTTAATGTAGACAAAGGGACAAGATTCATGCTGTTTAATAATTACAGCTGGACCCAAAATGGTTCTAATCTGTTATTTACTTTAGCAGATTGTTATATTATATTGGCATAATTTAGAATTGATGCAATCCAACCAACGCCAAACATAAACCAAAAAATACTAGTGGATCTTCTGGAGCTTTCATTTCTTCATCGTGATGTTTTCTGAgatattaggctcgttcgagatgagccaggcctgcgcagaatcgatcagcggcgatcggcgcccaatgcgtggcggttagatttgtgtccgacttgatcccgactcgCTCTGaggtcatgcacacgtgggcagcgataacctcacgagatcaaggcggccgcaggtttgaaaGGCAGGCAGCGCAGCCGCCGACTGCAAGACCCCAGGCGggcccagggcatgctgggaaacgcctggttggttcagaatcgactcaacatgatgttttatataaagtttttattgttttttaattggagggattttaattgCTATTTGTCTGGTTTAagggcttattctgtacagaacccTGCTTGTGTGGCTGGTGGTgacgttcagaagtcagagagactaaatctgttcagattacagatcacctacagtctgttgtttattaacatcagcaacagatcgcatgtagagcattttgacagctactctgtcataataacaacaactagaaactgtgtacaagctgatagatggttctgataacattttattaaatcagaatcgGACCTAAGAGGATGTGagtggtttctgtgacttcctgttcagcctgaaggctgctggaaacagcTGGAAACTGTCTTGACCGCGGCTTTTtctcaccgcccccggctgccgccgccgccgccaccGCCACCTgttctcgtccactttacaggcgaggcgcagttcatctcaaaCAAGCCAAATGTCACCATTAAGGGCTTTAGCTTAAGGACAAGCGATAATATTTCATAGCACAAAGTGATaatgcattcttttttttctggacCGTTTAGGACAACAGGTTTTTGACAGAAGGTTGATTTTAAATGTGAAACAGTGGCTTCGGTCTGTTAATCAGTGTACTAGTGTGCGTTTTGAAGCAAATGTCAACGTGATCCTCTGTAAGAGTACGTGACCCTAAAATACAGTATTTTTTAAGTATCTCAAAATTCTTTTTGTATCGTTGTGTCTCACGTTGTTGGACGAGATATGCTGGACTTATTAAGACACACCAACGTTTTTCTAATTTGTTGTTTAGTAGTTGGTGCGACACGATGACAGCCTATTAAGGGCTTTGAAACCTGTGGGATCCTCCAGCCTTTTTGTGGCTTTTAATTATCGGGAAGGTTGAGCATGAAATCTAAATATAGATTTAAAGATCACTTCCAGCCTTCATTGAGGACAAAGAAATGTTGACTTGAAGCGTTTGTAGAAGTAAATTAACTCTTACAAAGCATCTCAGAATAGTCACGCTTGTATTGAAACAGTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285266 lncRNA upstream 77359 6960204 ~ 6960437 (+) True G210523
TU285265 lncRNA upstream 78181 6957395 ~ 6959615 (+) False psmd11b
TU285240 lncRNA upstream 96564 6940371 ~ 6941232 (+) True G210505
TU285174 lncRNA upstream 224824 6720237 ~ 6812972 (+) False G210449
TU285173 lncRNA upstream 224824 6792481 ~ 6812972 (+) True G210449
TU285296 lncRNA downstream 7085 7048464 ~ 7072516 (+) True G210544
XR_005637793.1 lncRNA downstream 105042 7146421 ~ 7264824 (+) True LOC120550855
TU285294 lncRNA downstream 268513 7309892 ~ 7311059 (+) True G210542
TU285295 lncRNA downstream 277872 7319251 ~ 7326748 (+) True G210543
TU285389 lncRNA downstream 607742 7649121 ~ 7650721 (+) True G210620
XM_039788587.1 mRNA upstream 3371 7030818 ~ 7034425 (+) False ormdl3
XM_039788633.1 mRNA upstream 44708 6961239 ~ 6993088 (+) True LOC120551313
XM_039788634.1 mRNA upstream 44708 6961574 ~ 6993088 (+) False LOC120551313
XM_039788635.1 mRNA upstream 44708 6965025 ~ 6993088 (+) False LOC120551313
XM_039788992.1 mRNA upstream 77720 6951067 ~ 6960076 (+) True psmd11b
XM_039787751.1 mRNA downstream 223467 7264846 ~ 7302723 (+) False LOC120550851
XM_039787754.1 mRNA downstream 223467 7264846 ~ 7302723 (+) False LOC120550851
XM_039787756.1 mRNA downstream 223467 7264846 ~ 7301253 (+) False LOC120550851
XM_039787755.1 mRNA downstream 234732 7276111 ~ 7302723 (+) False LOC120550851
XM_039787752.1 mRNA downstream 234733 7276112 ~ 7302723 (+) True LOC120550851
TU284934 other upstream 565641 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 945058 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 1349900 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 3010298 3998373 ~ 4027498 (+) False LOC120551345
TU283997 other upstream 3214545 3821899 ~ 3823251 (+) False LOC120550571
TU285573 other downstream 1016364 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 1158186 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 1559799 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 2001267 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 2531736 9573115 ~ 9576418 (+) True rpl38

Expression Profile