RNA id: TU285389


Basic Information

Item Value
RNA id TU285389
length 1461
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G210620
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 7649121 ~ 7650721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGTGCAAATAGTTTATTGGCGGATTGACAGTAGAGGGGATTTAATGTATACACTCTGTGACTGAGGAACAATTTGACAAGCATAGATATATTAAGAATTATTCTCTCTCGAGCATGAAAACAGACAATCAACGGAAGGAAATGTGGTCAAAAAATAATCCTCAACCacactctctcgctctctcgctctctcgcgctcacacacacacacacacacacacacacacacacacacacaaagtaaacaTTAACTTAAatctgcaatgaaataaaatatacttGGTTCCACTAGGAGAGTGAGGAATGTGTTGTTAGAGACATCTCAGTTTGGATTAGAGCTAAAAGACAGCAGAATGAGGAGGACACGCAAAGATGCGGGCGGGGGTCGTTAAACCATGATGCAAAGCGGACATTTTCTACTGTGACTGTGCTAAGACCACGAGACCACGGCTCATCTCTAAAGCGTCTACCTGTCATGCAGGTGTCTCCTAAAAAGCAGTAGAAAACATCAGAGTCTGAACAGTGATCCGTTCGGACAGTGTTTGTATACATTCCACATGTCAACGTCTAAAATAACAGTACTCTGATACAGAAAAAAGATTGCATTGTTTAGGCAGATTTCACTAcgataatcgagaaaaaaaaaaaaaagggttaaagATTGGTTGTTCTCACTACTTGCACTGCtgacccaaaaaataaaattaataatctaacaacaacaacaatacagcTGAGCTACAACGGCCATACAAACACTAAAAGATGAAGAGCTGAAATACACTTTTGTCCTTTtctaaaactacaactcccagctCCCTTTGACCAACACATGAGGCTCTATGGCCCCAGGTAAACAAGGCATGGCAAAGGTTAACCACTATTCATAAAAAACTCACAagtgtgtatatggttgaattTGTTAAGATGTTGATGCTAAAAGAAGGCAAAAGGCAGGAGAAGCCATTCATTCCTTTCGCTTGAGTTCGAGAAATAAATGCTCCTCTTTCATTTTCCATTATTGTCTTATTATCGTTACTCTTGGTTCAAATAAACGAGCCACCCTTTGGAACATCAATCAGTTGCACAAATCATGAACAGGTTTTCtcctttttacataattcaaaCAAAATCTAGAGACACTGGAAAGGGTGATATACATATGCAGGTCGTAATCTAAATATTCTCTTTACATTACGGTATGTTTAAAAGTCAAATCAATTCTCATtagtagcatttttttttttttttttttaactccacaGATTCCCCTTCTCTCAGTGCTTAGTGTTGACAGCTTTGTTCTGGCCGTCTTCGGCTATCTGCACCAGCTCGTTGACGGTGTGCAGAAGGCTGTAGCCGTGTTTCCTCAGCAGCCGCTGGTTCAGACGCTGGTCTCTGAAGCCCATCTCCAGCAGCATCGCCATCAGGGAGGGGTCCTGCCTGGTGGCTGGGTCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285295 lncRNA upstream 322373 7319251 ~ 7326748 (+) True G210543
TU285294 lncRNA upstream 338062 7309892 ~ 7311059 (+) True G210542
XR_005637793.1 lncRNA upstream 384297 7146421 ~ 7264824 (+) True LOC120550855
TU285296 lncRNA upstream 576605 7048464 ~ 7072516 (+) True G210544
TU285285 lncRNA upstream 607742 7037796 ~ 7041379 (+) False ormdl3
TU285417 lncRNA downstream 17989 7668710 ~ 7670981 (+) True G210641
TU285460 lncRNA downstream 81520 7732241 ~ 7737148 (+) True G210669
TU285465 lncRNA downstream 101877 7752598 ~ 7754384 (+) True G210674
TU285501 lncRNA downstream 252511 7903232 ~ 7905507 (+) True G210697
TU285502 lncRNA downstream 255447 7906168 ~ 7906879 (+) True G210698
XM_039787745.1 mRNA upstream 300370 7337021 ~ 7348751 (+) True LOC120550848
XM_039787744.1 mRNA upstream 313022 7323658 ~ 7336099 (+) True LOC120550847
XM_039787751.1 mRNA upstream 346398 7264846 ~ 7302723 (+) False LOC120550851
XM_039789353.1 mRNA downstream 20768 7671489 ~ 7679738 (+) True psme3
XM_039788981.1 mRNA downstream 37410 7688131 ~ 7691019 (+) True g6pc1a.2
XM_039787203.1 mRNA downstream 42189 7692910 ~ 7697411 (+) False LOC120550600
XM_039787202.1 mRNA downstream 42189 7692910 ~ 7697411 (+) False LOC120550600
XM_039787201.1 mRNA downstream 42190 7692911 ~ 7697411 (+) True LOC120550600
TU284934 other upstream 1176966 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 1556383 6083435 ~ 6092738 (+) False kctd2
XR_005637777.1 other upstream 1961225 5591336 ~ 5687896 (+) False LOC120550763
XR_005637866.1 other upstream 3621623 3998373 ~ 4027498 (+) False LOC120551345
TU283997 other upstream 3825870 3821899 ~ 3823251 (+) False LOC120550571
TU285573 other downstream 407022 8057743 ~ 8062269 (+) True dydc2
XR_005637922.1 other downstream 548844 8199565 ~ 8199679 (+) True LOC120551817
unassigned_transcript_1162 other downstream 950457 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637919.1 other downstream 1391925 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 1922394 9573115 ~ 9576418 (+) True rpl38

Expression Profile