RNA id: TU285825


Basic Information

Item Value
RNA id TU285825
length 255
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G210938
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 8674006 ~ 8674260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatatccaTTCTGTACTTCATAACAGCTTACACCACTGCTCTGCTTAGTGGAATTATGTCCAAAAAGGAACCAAATCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285729 lncRNA upstream 48898 8581005 ~ 8625108 (+) True G210866
TU285725 lncRNA upstream 106519 8532988 ~ 8567487 (+) True G210862
TU285714 lncRNA upstream 176352 8496613 ~ 8497654 (+) True gngt2b
TU285696 lncRNA upstream 215803 8456750 ~ 8458203 (+) True G210837
TU285646 lncRNA upstream 472520 8201281 ~ 8201486 (+) True G210799
TU285867 lncRNA downstream 294823 8969083 ~ 8971699 (+) True G210964
TU285871 lncRNA downstream 305548 8979808 ~ 8980033 (+) True G210968
TU285876 lncRNA downstream 336752 9011012 ~ 9011388 (+) True G210972
TU285942 lncRNA downstream 747192 9421452 ~ 9421689 (+) True G211022
XR_005637757.1 lncRNA downstream 778339 9452599 ~ 9456949 (+) True LOC120550588
XM_039787391.1 mRNA upstream 64342 8601846 ~ 8609664 (+) True fbxw10
XM_039788206.1 mRNA upstream 77991 8576662 ~ 8596015 (+) True LOC120551063
XM_039788410.1 mRNA upstream 109419 8543535 ~ 8564587 (+) True col1a1b
XM_039789089.1 mRNA upstream 167499 8499730 ~ 8506507 (+) True si:ch1073-13h15.3
XM_039789254.1 mRNA upstream 176378 8496662 ~ 8497628 (+) False gngt2b
XM_039787937.1 mRNA downstream 103394 8777654 ~ 8815625 (+) True LOC120550936
XM_039787938.1 mRNA downstream 145502 8819762 ~ 8840446 (+) True hs3st3b1b
XM_039789380.1 mRNA downstream 368386 9042646 ~ 9050128 (+) False LOC120551795
XM_039789379.1 mRNA downstream 368386 9042646 ~ 9046470 (+) False LOC120551795
XM_039789375.1 mRNA downstream 369311 9043571 ~ 9046470 (+) True LOC120551795
unassigned_transcript_1162 other upstream 72758 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637922.1 other upstream 474327 8199565 ~ 8199679 (+) True LOC120551817
TU285573 other upstream 611737 8057743 ~ 8062269 (+) True dydc2
TU284934 other upstream 2201851 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 2581268 6083435 ~ 6092738 (+) False kctd2
XR_005637919.1 other downstream 368386 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 898855 9573115 ~ 9576418 (+) True rpl38
XR_005637867.1 other downstream 1210111 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other downstream 1210111 9884371 ~ 9898509 (+) False qki2
TU286110 other downstream 1379001 10053261 ~ 10062702 (+) True G211151

Expression Profile