RNA id: TU285876


Basic Information

Item Value
RNA id TU285876
length 377
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G210972
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 9011012 ~ 9011388 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttttattgtggctttcttatagtaaagcataaagcatattcagggttcccatatcttcttaatctcactcatcaaatcaaaatcacattctgttctctgacttttcaggcacaattatcttaagttcaaagaacaaacagcagatttttagagctgacatcaatgtacagaaacatttcttgcaacacgggtgtatgacgttatcttcaccactaccctgttcaccgagttcaccactatcgtcggggtggtcgcagggctcaacataaaaaaaaatccccactggcccccggggccagtagatcagagttttgctggccccttctacatttttactggccctgaaacaaatatcataggtgtgattggaaaagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285871 lncRNA upstream 30979 8979808 ~ 8980033 (+) True G210968
TU285867 lncRNA upstream 39313 8969083 ~ 8971699 (+) True G210964
TU285825 lncRNA upstream 336752 8674006 ~ 8674260 (+) True G210938
TU285729 lncRNA upstream 385904 8581005 ~ 8625108 (+) True G210866
TU285725 lncRNA upstream 443525 8532988 ~ 8567487 (+) True G210862
TU285942 lncRNA downstream 410064 9421452 ~ 9421689 (+) True G211022
XR_005637757.1 lncRNA downstream 441211 9452599 ~ 9456949 (+) True LOC120550588
TU285944 lncRNA downstream 441225 9452613 ~ 9456903 (+) False LOC120550588
TU285951 lncRNA downstream 484623 9496011 ~ 9497523 (+) True G211030
TU285952 lncRNA downstream 484623 9496011 ~ 9497523 (+) False G211030
XM_039787938.1 mRNA upstream 170566 8819762 ~ 8840446 (+) True hs3st3b1b
XM_039787937.1 mRNA upstream 195387 8777654 ~ 8815625 (+) True LOC120550936
XM_039787391.1 mRNA upstream 401348 8601846 ~ 8609664 (+) True fbxw10
XM_039788206.1 mRNA upstream 414997 8576662 ~ 8596015 (+) True LOC120551063
XM_039788410.1 mRNA upstream 446425 8543535 ~ 8564587 (+) True col1a1b
XM_039789380.1 mRNA downstream 31258 9042646 ~ 9050128 (+) False LOC120551795
XM_039789379.1 mRNA downstream 31258 9042646 ~ 9046470 (+) False LOC120551795
XM_039789375.1 mRNA downstream 32183 9043571 ~ 9046470 (+) True LOC120551795
XM_039789376.1 mRNA downstream 32899 9044287 ~ 9046470 (+) False LOC120551795
XM_039789377.1 mRNA downstream 32899 9044287 ~ 9046470 (+) False LOC120551795
unassigned_transcript_1162 other upstream 409764 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637922.1 other upstream 811333 8199565 ~ 8199679 (+) True LOC120551817
TU285573 other upstream 948743 8057743 ~ 8062269 (+) True dydc2
TU284934 other upstream 2538857 6470656 ~ 6472155 (+) True G210266
XR_005637869.1 other upstream 2918274 6083435 ~ 6092738 (+) False kctd2
XR_005637919.1 other downstream 31258 9042646 ~ 9046468 (+) False LOC120551795
TU285955 other downstream 561727 9573115 ~ 9576418 (+) True rpl38
XR_005637867.1 other downstream 872983 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other downstream 872983 9884371 ~ 9898509 (+) False qki2
TU286110 other downstream 1041873 10053261 ~ 10062702 (+) True G211151

Expression Profile