RNA id: TU285955


Basic Information

Item Value
RNA id TU285955
length 668
RNA type TUCP
GC content 0.40
exon number 5
gene id rpl38
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 9567529 ~ 9576418 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCACCCCTTTTCATCCCCTCTCTGGCAGACTGACGTTCAGTCGGCTGACACAAGCAGCATGCCTCGCAAGATAGAAGAAATCAAAGATTTCCTGCTGACAGCCAGGAGGAAGGATGCCAAGTCCGTAAAGATCAAGAAGAACAAGGACAATGTTAAGTTCAAGGTGCGCTGCAGCAGGTACCTGTACACCCTGGTCATCACAGACAAGGAGAAGGCTGAGAAGCTGAAGCAGTCCCTGCCCCCAGGTCTGGCTGTGAAGGAGCTCAAGTAAATCCGTGATGTACAGATAATTGTAATAAAAATTGGAAAAAGAGTAATTTGTCTGGTTTTGTGTGCATTGTATTGTCATGCTGTAATGCgaacacaaaatatttaaaaaacttAATTATGAGTGTTTTCAGTCAGGGTAGTGTGGCCAGCTTGTTAAAATAGGTCATACATAGTTTTCTTCTTTCCATTTTTCCACCAGATGTCAGATTTGAGCTATAGTCAGACTGCAAAGTGTATAAAGAGAACCACCCTCAATTTCAGACATGTTAATGGTGTATGaaattgaaaaatatttttaaaaaatctggatatttacatttaatgggcactttaaaaaaaaaggctattAATGCGGTTGCTGTTTTAAGATTAAACTGCATTTCACCTTGCGCCAAC

Function

GO:

id name namespace
GO:0000062 fatty-acyl-CoA binding molecular_function
GO:1901567 fatty acid derivative binding molecular_function
GO:0033218 amide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285951 lncRNA upstream 75592 9496011 ~ 9497523 (+) True G211030
TU285952 lncRNA upstream 75592 9496011 ~ 9497523 (+) False G211030
TU285953 lncRNA upstream 75592 9496011 ~ 9497523 (+) False G211030
XR_005637757.1 lncRNA upstream 116166 9452599 ~ 9456949 (+) True LOC120550588
TU285944 lncRNA upstream 116212 9452613 ~ 9456903 (+) False LOC120550588
TU286015 lncRNA downstream 252431 9828849 ~ 9830042 (+) True G211084
TU286016 lncRNA downstream 258642 9835060 ~ 9838125 (+) True G211085
TU286023 lncRNA downstream 273076 9849494 ~ 9849880 (+) False LOC120551355
TU286082 lncRNA downstream 350236 9926654 ~ 9984696 (+) True G211130
TU286093 lncRNA downstream 377457 9953875 ~ 9954681 (+) True G211139
XM_039789380.1 mRNA upstream 522987 9042646 ~ 9050128 (+) False LOC120551795
XM_039789379.1 mRNA upstream 526645 9042646 ~ 9046470 (+) False LOC120551795
XM_039789375.1 mRNA upstream 526645 9043571 ~ 9046470 (+) True LOC120551795
XM_039789376.1 mRNA upstream 526645 9044287 ~ 9046470 (+) False LOC120551795
XM_039789377.1 mRNA upstream 526645 9044287 ~ 9046470 (+) False LOC120551795
XM_039788401.1 mRNA downstream 972 9577390 ~ 9644745 (+) True ttyh2
XM_039788402.1 mRNA downstream 972 9577390 ~ 9644745 (+) False ttyh2
XM_039789196.1 mRNA downstream 69273 9645691 ~ 9690366 (+) True kif19
XM_039789274.1 mRNA downstream 115094 9691512 ~ 9696774 (+) True si:ch73-127m5.2
XM_039789195.1 mRNA downstream 120510 9696928 ~ 9703412 (+) True si:dkey-21e13.3
XR_005637919.1 other upstream 526647 9042646 ~ 9046468 (+) False LOC120551795
unassigned_transcript_1162 other upstream 971867 8601178 ~ 8601248 (+) True trnag-ccc_1
XR_005637922.1 other upstream 1373436 8199565 ~ 8199679 (+) True LOC120551817
TU285573 other upstream 1510846 8057743 ~ 8062269 (+) True dydc2
TU284934 other upstream 3100960 6470656 ~ 6472155 (+) True G210266
XR_005637867.1 other downstream 307953 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other downstream 307953 9884371 ~ 9898509 (+) False qki2
TU286110 other downstream 476843 10053261 ~ 10062702 (+) True G211151
TU286128 other downstream 486367 10062785 ~ 10065126 (+) True G211164
XR_005637923.1 other downstream 639947 10216365 ~ 10216479 (+) True LOC120551818

Expression Profile