RNA id: TU286128


Basic Information

Item Value
RNA id TU286128
length 387
RNA type TUCP
GC content 0.62
exon number 3
gene id G211164
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10062785 ~ 10065126 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTGAGTCCTGCTCCTCTACAGCCACTGAGTAGTTTTGTTCCTTTGGCTCCTGGGAAAACTCCACGTGCTGCTGCAATGGCCCTCGGCTCTCCATGGGGGCGTCCTGGTTCTCCTCGCCCTCAGCGTCTCTACCCTCGTCATTCCCGGGCTCGCCTTCGGCCCCGGCCAGGTAGGACCCTGACATGGAGGACATGGTGTCAGTGCTGATGTGGGAGTGCTGGGAGTGGGACGAGGCCATGGACATCACTGACTGGACCAGGCTGCTGCTCACTGGGtCTTCAGGGGAGGTGATGGTGGAGGAGAGCGGCGTTCCCGTGCAGGACGACTGGTCGATGGCTCCAGACGAGGAGAGAGTCAGGTTCTCGCTGTCTGGAGTCACTCGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286116 lncRNA upstream 51618 10010881 ~ 10011167 (+) True G211157
TU286082 lncRNA upstream 78089 9926654 ~ 9984696 (+) True G211130
TU286093 lncRNA upstream 108104 9953875 ~ 9954681 (+) True G211139
TU286023 lncRNA upstream 212905 9849494 ~ 9849880 (+) False LOC120551355
TU286016 lncRNA upstream 224660 9835060 ~ 9838125 (+) True G211085
XR_005637846.1 lncRNA downstream 70799 10135925 ~ 10136650 (+) True LOC120551238
TU286145 lncRNA downstream 74655 10139781 ~ 10140042 (+) True G211175
TU286151 lncRNA downstream 98256 10163382 ~ 10163678 (+) True G211181
TU286152 lncRNA downstream 100017 10165143 ~ 10165526 (+) True G211182
XR_005637849.1 lncRNA downstream 121791 10186917 ~ 10188973 (+) True LOC120551242
XM_039788428.1 mRNA upstream 113586 9931194 ~ 9949199 (+) True LOC120551200
XM_039788381.1 mRNA upstream 136460 9923421 ~ 9926325 (+) True nat9
XM_039788377.1 mRNA upstream 139718 9918121 ~ 9923067 (+) True syt15
XM_039788380.1 mRNA upstream 154846 9904130 ~ 9907939 (+) True timm23a
XM_039788743.1 mRNA upstream 165161 9884371 ~ 9897624 (+) True qki2
XM_039788496.1 mRNA downstream 12064 10077190 ~ 10080626 (+) False srsf2a
XM_039788495.1 mRNA downstream 12065 10077191 ~ 10080626 (+) True srsf2a
XM_039788497.1 mRNA downstream 12065 10077191 ~ 10080626 (+) False srsf2a
XM_039788498.1 mRNA downstream 12065 10077191 ~ 10080626 (+) False srsf2a
XM_039788490.1 mRNA downstream 19445 10084571 ~ 10090078 (+) False LOC120551228
TU286110 other upstream 83 10053261 ~ 10062702 (+) True G211151
XR_005637867.1 other upstream 164276 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other upstream 164276 9884371 ~ 9898509 (+) False qki2
TU285955 other upstream 486367 9573115 ~ 9576418 (+) True rpl38
XR_005637919.1 other upstream 1016317 9042646 ~ 9046468 (+) False LOC120551795
XR_005637923.1 other downstream 151239 10216365 ~ 10216479 (+) True LOC120551818
XR_005637921.1 other downstream 151982 10217108 ~ 10217221 (+) True LOC120551816
unassigned_transcript_1164 other downstream 298706 10363832 ~ 10363913 (+) True trnal-aag_10
TU286340 other downstream 391113 10456239 ~ 10460499 (+) True G211301
XR_005637805.1 other downstream 499126 10564252 ~ 10621412 (+) True usp54b

Expression Profile