RNA id: TU286151


Basic Information

Item Value
RNA id TU286151
length 297
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G211181
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10163382 ~ 10163678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACATTTACTCTTGCTGGCAGCCGATATACGATCAGATGCTTAAAACAGCGAATATAAATTTTGTGCAAGATATTCCTGACTCGCTATGCGACGACGCACTTCTCCCCCCTACTAAGAATAATCTGCTAGTAATCGATGACCTTATGAACCAGGCCAGTGGTAATTTGGAGGTgcaaaatgttttcacaaaataCGTGCACCATAGACGTTTAAGTTGTATATATTTAGTGCAGAATCTGTTTATACAAGGCAAGTCCAGTCGTACAATCAGTTTGAACACAAGctatatgttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286145 lncRNA upstream 23340 10139781 ~ 10140042 (+) True G211175
XR_005637846.1 lncRNA upstream 26732 10135925 ~ 10136650 (+) True LOC120551238
TU286116 lncRNA upstream 152215 10010881 ~ 10011167 (+) True G211157
TU286082 lncRNA upstream 178686 9926654 ~ 9984696 (+) True G211130
TU286093 lncRNA upstream 208701 9953875 ~ 9954681 (+) True G211139
TU286152 lncRNA downstream 1465 10165143 ~ 10165526 (+) True G211182
XR_005637849.1 lncRNA downstream 23239 10186917 ~ 10188973 (+) True LOC120551242
TU286273 lncRNA downstream 79939 10243617 ~ 10244815 (+) True G211256
TU286274 lncRNA downstream 79939 10243617 ~ 10244815 (+) False G211256
TU286289 lncRNA downstream 125901 10289579 ~ 10329262 (+) False socs3b
XM_039788490.1 mRNA upstream 73304 10084571 ~ 10090078 (+) False LOC120551228
XM_039788489.1 mRNA upstream 73304 10084571 ~ 10090078 (+) False LOC120551228
XM_039788491.1 mRNA upstream 73787 10084571 ~ 10089595 (+) True LOC120551228
XM_039788495.1 mRNA upstream 82756 10077191 ~ 10080626 (+) True srsf2a
XM_039788460.1 mRNA downstream 58645 10222323 ~ 10233271 (+) True trim8b
XM_039788492.1 mRNA downstream 84020 10247698 ~ 10255361 (+) True sfxn2
XM_039788494.1 mRNA downstream 92396 10256074 ~ 10268624 (+) True timp2a
XM_039788472.1 mRNA downstream 116946 10280624 ~ 10298425 (+) False LOC120551220
XM_039788475.1 mRNA downstream 119365 10283043 ~ 10298425 (+) False LOC120551220
TU286128 other upstream 98256 10062785 ~ 10065126 (+) True G211164
TU286110 other upstream 100680 10053261 ~ 10062702 (+) True G211151
XR_005637867.1 other upstream 264873 9884371 ~ 9898509 (+) False qki2
XR_005637868.1 other upstream 264873 9884371 ~ 9898509 (+) False qki2
TU285955 other upstream 586964 9573115 ~ 9576418 (+) True rpl38
XR_005637923.1 other downstream 52687 10216365 ~ 10216479 (+) True LOC120551818
XR_005637921.1 other downstream 53430 10217108 ~ 10217221 (+) True LOC120551816
unassigned_transcript_1164 other downstream 200154 10363832 ~ 10363913 (+) True trnal-aag_10
TU286340 other downstream 292561 10456239 ~ 10460499 (+) True G211301
XR_005637805.1 other downstream 400574 10564252 ~ 10621412 (+) True usp54b

Expression Profile