RNA id: TU286390


Basic Information

Item Value
RNA id TU286390
length 205
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G211327
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10683043 ~ 10683247 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccaaacctccgggacctcttaacctgggacccttgctgtcatcaggtcagctgctagctgctatcatcctcgtctttcctgccgccacggcatcactattttatgaatgaaacatggcggagaaacgtcaaagtgctgataactcctctgtatcaaaaaagaaagtaaggctctatctcaaGAGTTACCACAACTTTGGTTTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286374 lncRNA upstream 71144 10597227 ~ 10611899 (+) True G211321
TU286377 lncRNA upstream 95191 10572625 ~ 10587852 (+) True G211323
TU286372 lncRNA upstream 96946 10564246 ~ 10586097 (+) False usp54b
TU286342 lncRNA upstream 151764 10453633 ~ 10531279 (+) False G211301
TU286439 lncRNA downstream 131497 10814744 ~ 10815203 (+) True G211356
TU286421 lncRNA downstream 134022 10817269 ~ 10818275 (+) True G211349
TU286429 lncRNA downstream 135811 10819058 ~ 10912098 (+) False kcng3
TU286430 lncRNA downstream 135811 10819058 ~ 10896709 (+) True kcng3
TU286431 lncRNA downstream 135811 10819058 ~ 10889328 (+) False kcng3
XM_039789243.1 mRNA upstream 412 10658853 ~ 10682631 (+) True opn4b
XM_039789244.1 mRNA upstream 412 10658853 ~ 10682631 (+) False opn4b
XM_039787929.1 mRNA upstream 61631 10564221 ~ 10621412 (+) False usp54b
XM_039787928.1 mRNA upstream 61631 10564253 ~ 10621412 (+) False usp54b
XM_039787931.1 mRNA upstream 61631 10577660 ~ 10621412 (+) False usp54b
XM_039787803.1 mRNA downstream 4046 10687293 ~ 10700764 (+) True ldb3b
XM_039787804.1 mRNA downstream 4046 10687293 ~ 10700764 (+) False ldb3b
XM_039787806.1 mRNA downstream 4046 10687293 ~ 10700764 (+) False ldb3b
XM_039787805.1 mRNA downstream 4046 10687293 ~ 10700764 (+) False ldb3b
XM_039787807.1 mRNA downstream 4046 10687293 ~ 10700764 (+) False ldb3b
XR_005637805.1 other upstream 61631 10564252 ~ 10621412 (+) True usp54b
TU286340 other upstream 222544 10456239 ~ 10460499 (+) True G211301
unassigned_transcript_1164 other upstream 319130 10363832 ~ 10363913 (+) True trnal-aag_10
XR_005637921.1 other upstream 465822 10217108 ~ 10217221 (+) True LOC120551816
XR_005637923.1 other upstream 466564 10216365 ~ 10216479 (+) True LOC120551818
TU286397 other downstream 19719 10702966 ~ 10715226 (+) True sncgb
TU286398 other downstream 19719 10702966 ~ 10715226 (+) False sncgb
TU286399 other downstream 19719 10702966 ~ 10715354 (+) False sncgb
TU286403 other downstream 40286 10723533 ~ 10725559 (+) True G211336
TU286436 other downstream 118093 10801340 ~ 10803972 (+) True G211354

Expression Profile