RNA id: XM_039787810.1


Basic Information

Item Value
RNA id XM_039787810.1
length 2881
RNA type mRNA
GC content 0.46
exon number 5
gene id sncgb
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10702966 ~ 10715354 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCAGCATCCGGCCGTCTctactcctcctcttctctccctcttgtGCATACCGGCTGTTTcctcccccctctttctctcagtCTGCGTGCTGTAGCCCTGCTGTGCAGTCCTCACAGCCCTCTGTTGTAGCACCAAAGGGAGGAGGAGCcaccggcacacacacacacacacacacacacacacagacacacaccagacactcacacagacatacacactctcACATCTCACATCATCTCTTCTGCACACTCATTGTAAGCACCAGCCAGGCCCGTTTGGAGAAGGGGAGCCCAGCCGTCTCGTCGCCCAAGATGGATGTACTGATGAAGGGGTTCTCTATGGCCAAGGATGGTGTGGTGGCCGCCGCAGAGAAGACCAAAGCCGGCATGGAGGAGGCAGCTGCCAAGACCAAGGAAGGGGTGATGTATGTAGGCAATAAGACAAAGGAGGGAGTTGTGTCATCAGTAAACACAGTGGCCAACAGGACCGTAGATCAGACCAACATCGTTGGAGACGCAGCGGCGGCCGGGGCCAACGAAGTGTCACAGGCGAGCGGGGAGGGGGTTGAGAACGTCGGCGCGTCAACTGGGATGATCAACCAGggagaatatggaggaatgGAGCAGGGTGGGGATGGAGGAGAGGGGTATTAGTCGTCTTCAGGACCTCCCCTCCCGTGCTCTCCAGTGGTTCCTCGCTCCCCTCGCCTCGCTGTACCAGACTCCAGATGttcaacatatttttttgtgactttacAGAACCAAAATCAACTAAAACAGACTCTTCCAGATGCCGCACCTCAGCACCTGTCTCCCCctctgcctcccccccccccagcagcAGCCCTCTGCCACCTGTCCTCACCCTGTCTCCTCCCTTCTGATTTTCTGCAGCCTGTAGCTTTTCCTCCACCGCCGTCTTACCCTTGCCAAACCTGTGTGTTAGTGTCGTCCTGATATGAACCCTGGTGTTGTTACAGTCCCCCACGCCTACCAACCAATAGGGaaacctcacacacaaacacacatgtacacacaaacaaaaagagaCACCTTTattccacacatgcatgaaacacacacatacagtacataccacAAATgccagcacagacacacacacacacacacactgggcaaaCATGTTAACTAGAGGACATTTTTTGGGTGTGTAAGCTATGCCTATGCAGTCCACAACAATAGCTCACTGAGTGACTGAGGCAGGGTATGAGAGGGTGTGTGAtcggctgtttgtgtgtgtgtgtgcatgcgtagCTGCTGGTGTATAAAATATATCAACCAGAGGCTTGTGCAGAGAATCGTGCATTGATGACAGATATcattctgttttgtgtgtgcagtagtTAGATAGCTACAGTAGACTGCATGAACAGATGTGTAGAATGACTTGTCTCGTGTTGTAACTATAGAGTAGCAGCTGTTCTGTGTAGCTTTGTATGGCTTAGTGTGTGTTTGGCCTCGACATTTAGAAACAGGGTTATTTACCAGTAAGCAATAAACAAATGCTCATTTTTCTCAGCAGTTAAGAGTGAAACCTTGAATTGTGTTCATGCGATGCATGAGAAAACAAGAGCAGTTGTTCCACAAGTTGTTACTTGGTTtcaatttgtcaaaaaaaatcactATAACGTTAAATATATGTGGCTAAATTCAAGTGAGAAGATTTTGATTCTtggattctgattggttcatggAAATCCCTGACAACTCCTTTTCcaccagtgttgctttaactttggcagaaaataatgtattcatgtatGCAGGACCCCTTCATTTATAGTACTTAAAAAGCTGATTAATGTCTTCAACCCCACAGGTGGGTCTGTCATTACAAACTGATTGAATTTCTGGGGGAATGTGCTTAAATGCTGCACAATGAAATTAGAAtaattccaaaaaaaaacatgttgggtTTTAAACATTTCTCTCAAAATCAAATAGCTTTGATGAAGAAAAAAGTTGATACAGAATATATGTCAGACAATCTACTGAAGAGGAAATATGAGCAGCTGATACTGATCACATATTGTTATTGTGTACCGTAGTTGCTTTTTAGTCTTTGTGAGAGTGGTTTGCATGCTATCAAGAGAAACATGCAGTGTGGACATTAGTCATTGATTCAGTGAGTTAATCGGTCAGCTAGAAGAACAGCATGAAGGTTTGGGTGTTATGATGGATCAGCTTTATGTGTAGTTCTGTGTACAGCTTGAATTCTGGGATGCATAGTTGTTTTTAAGGTAGTTTTGTATTTCACGAGTCTGAACCTTGGTTGTTCTGAAGCTCCCACCCATCAACtgtctcagccaatcagagaatTCCCTTCTCCTCTCAGTCAGTGTGATGCCACCTTTCACAGCTTGTCTGCCTGGCATCAGTGGGTGTCTGTatgcactgtatgtgtgtgtgtatgtgtgtgttaacataGAACCGGTCCAGccagcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtttctggagcaggtttgtgtgtttttactttGAGGTCAATGGAAACTGATGACTGCATGTTGCCTTATCAAGCATTCTCTGACATTCACATGCATATAGATTACACTCGACACTACACTTGTACCAACACACGCAGCACACTCTAaacaacacacaatcacaattCCCACcttaaatacacaaacacaaaatcacACACCATGTTTAAGTTGGCATCAAAGCAGACTCGCTGATTTTATAAACAGTACCAGTGAAATTAAAAAGGTTTTGGTTGAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286390 lncRNA upstream 20114 10683043 ~ 10683247 (+) True G211327
TU286374 lncRNA upstream 91462 10597227 ~ 10611899 (+) True G211321
TU286377 lncRNA upstream 115509 10572625 ~ 10587852 (+) True G211323
TU286372 lncRNA upstream 117264 10564246 ~ 10586097 (+) False usp54b
TU286357 lncRNA upstream 195037 10506326 ~ 10508324 (+) True G211306
TU286439 lncRNA downstream 99514 10814744 ~ 10815203 (+) True G211356
TU286421 lncRNA downstream 102039 10817269 ~ 10818275 (+) True G211349
TU286429 lncRNA downstream 103828 10819058 ~ 10912098 (+) False kcng3
TU286430 lncRNA downstream 103828 10819058 ~ 10896709 (+) True kcng3
TU286431 lncRNA downstream 103828 10819058 ~ 10889328 (+) False kcng3
XM_039787803.1 mRNA upstream 2597 10687293 ~ 10700764 (+) True ldb3b
XM_039789404.1 mRNA downstream 177548 10892778 ~ 10897382 (+) False kcng3
XM_039789383.1 mRNA downstream 187464 10902694 ~ 10907344 (+) True LOC120551799
XM_039788979.1 mRNA downstream 207193 10922423 ~ 10926710 (+) False cript
XM_039787615.1 mRNA downstream 236957 10952187 ~ 10962659 (+) True msh2
XM_039789382.1 mRNA downstream 358247 11073477 ~ 11078007 (+) True chac2
XR_005637805.1 other upstream 81949 10564252 ~ 10621412 (+) True usp54b
TU286340 other upstream 242862 10456239 ~ 10460499 (+) True G211301
unassigned_transcript_1164 other upstream 339448 10363832 ~ 10363913 (+) True trnal-aag_10
XR_005637921.1 other upstream 486140 10217108 ~ 10217221 (+) True LOC120551816
XR_005637923.1 other upstream 486882 10216365 ~ 10216479 (+) True LOC120551818
TU286403 other downstream 8303 10723533 ~ 10725559 (+) True G211336
TU286436 other downstream 86110 10801340 ~ 10803972 (+) True G211354
TU286458 other downstream 187474 10902704 ~ 10907317 (+) False LOC120551799
TU286461 other downstream 207218 10922448 ~ 10927226 (+) True cript
XR_005637797.1 other downstream 648125 11363355 ~ 11400578 (+) False LOC120550876

Expression Profile