RNA id: XM_039789404.1


Basic Information

Item Value
RNA id XM_039789404.1
length 2864
RNA type mRNA
GC content 0.47
exon number 3
gene id kcng3
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10819058 ~ 10912098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAGTTCGGGAAGAGCATCTGCGTACTCAACGTAGGGGGAACCCGGTACGCCTTCACCCGCGAGGTGATTAAGGATTTCCCTCTCCGACGCGTCAGCCGCCTGCATGCATGCGCAACCGAGAAAGAGGTTCTTGAACTGTGCGATGACTACGACAGGGACCGGAATGAGTTTTTCTTTGACCGCCACGCGCAGGCTTTCGTGTTCATCATGCTCTACGTGCGCTCTGGTAAACTCCGCTTTGTCCCCGGAGTGTGTGAGCTGTCCTTCTACACAGAGATGCTCTACTGGGGACTGGAGAGCGCGCACCTGGACTCCTGCTGCCAGAAACGCCTGGACGACAGGATGTCCGAGATCGGACTGGACACTCTGTCCGAAGTGGACGTCGGAGTGTCGGGGGATGAGTCCCAGAGCTCGGGCGAGCCTGTGCAGCGGACTGCGCTCACCGGTCGCGCTAAATGGCTCGAGAAGATGCGCAAGACATTCGAGGAGCCCAACTCTTCGCTTTTGGCGCAGCTTTTGGCTTCAGTGTCTGTGATATTTGTGCTCGTTTCTATGATCATGCTGTGTGCTAGTACACTGCCGGACTGGGATACAGCCAAGAGAAATACTGTGGAGGAGCACAGGATAGTGGAGGCAGTGTGTATTGGCTGGTTTACAGCAGAGTGCATAATGCGCTTTCTGGTGGCCAGAAGCAAGTGGGACTTCCTCCGCCGGCCGCTGAACATCATCGACGTGATTGCCATCACCCCCTACTATGTCACAATGGTTATGGCCCGGGCAGGGATGCCGGGTGCCGGGCTCGGGGTTGCTGGGGTGATACTGCGTGTGCTGAGGATGATGCGAGTGTTCTGGCTAATGAAGCTGGCCAGACACTTTCTGGGCCTCCAGACATTGGGGCTGACGCCGCGGTGCTACCGGGAGATGGTCATGCTGAtggtgtttgtctttgttgccATGGCAATATACAGCGCTTTGGCCCAGCTGCTGGAGCACGGCTTGGACTTGGGAACCCGGAACCCGGATTACGCCAGCATCCCAGCAGCCGCCTGGTGGGTCATCATTTCCATGACGACAGTGGGGTACGGGGATGTGTACCCTGTGACAGTTGGGGGACGGGTGCTTGGGGGAATGTGTGTAGTGAGCGGCATTGTTCTCTTGGCACTTCCCATCACATTCATTTACCACAGTTTTGTACAGTGCTACCAAGAACTTAAACTCCGCTCTGCCAGGTACGCACGCAGCCTGTCAGTGGAGATGCTGCAATGAAcgtgcatttatatcaaaacacCTTTGGCCCTGCTTACATCAGAAAGAAACTCAACAAACCAGTAGACCTGCTGATCCCATTGTGAAATAGTGATCCATTTTGTGCCCTGCCCTGTTTCCTGACTGAGCTAACCCTGGTTTTTTATTTGGCCTGTCTAGTTCCAGCCTGTTGTGTTGATGATCTCCAATTATTGTCTCCAACCGGCATGCTCTGCGCCCATCTCCTTAACAACATCACTTGGACAGAAGAATAGGAATAcacaaataattatttattaaacacacacaggcgcagTCAATCCAGTTTTGACAGCGGCTGCTGTTTACACTGTATTCCCATGGTTACAACATTGGCAGAGACGGCTgcatccagtgtgtgtgtgtgtgtgagtgtgggtgtgtgtgtgtgtttgtaggtgtgggtgtgtgtgtgtgtgtttgtttttcagcCTTTCACTATGTCTTATAGCACCCAGGTGGCACAAGTTACACAAGATTGATGTGTGACCTAGATGCATTCTGTTAAACCTGTGAAATACAGACATGAAGTGAAGAAGTGAGTGTTAAGTGGGGATGCAGAAGGGGTATACCGAGGGCTTAGTTGTGTAGGAGGTGCCAGTGATAATGAAATATGGAGACAAGTCATCAAGGACTACAAGGTGGCAGACAAATGACGGATTGACAGATATGATTGAATGTGAAATGGAGGATAAAAGATTCTGGGACAACAATGACAGAGATGACAAAATGTGGAACAACCCTGAGCACAAACAATTAATACTGAGAATGTGTTGCTTCTCCATTTGTGAGGGAATGTAAGACAATTTGTATTTCTGTCTCCAAGGCAACCTCCATCCTCCAAAATGCCAATCATAATGGTGGTGGATCTTGTGTGCACACAAATAGGCCACATCCACGCACACAACTCCTTGCTGCTACGCAGCATTTTTGCAATTATTGGAAAGATTGCATAACAGAAttcattgaaataaaaataaaatttaaaaataaattaccatGATGGTTCTGACAGTCATTATTCAGACATGTTTCCACTGTCCATGGTTTCCCAATATGATTTGTTGATCCAAATAAACAAGTCAACACCTCTCCCACACAACAGTCTTTCTctgcatctcctctcctcttcctcctgttgccatctttttacacacacacacacacacacacacacacacacacacacaccaagtccATGCTCTTTTGTTgcacaaataaaacaattaaGGAGTCCTTTAATTATCTGTCGGTCCTTGAATTTAAAGTCTACATTGTTTATTTCCTCAAAGACTTTGCAGCCTTGTATGAGTTTAGTATTGTAGACAGTACATATCTCACTATCGTTGTACTGTTATCAATGTGCTTTTTAAGTTGTCACAAATATGAGAGGTAATCAATATTTTACCACCTTGCCTATAATACATAATTTTCAAGCTCACGTGGCATAGCTTGTGACTTTTGGCCAGGCCTGATTGAAATCATCAATCAAAACCTTTTCATCAGTATACCACGAACTTGTAATTAATGTGATTATTGTATGAGCTTTATAATAAAATTTTTGTGAGCAAAATGTC

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286431 lncRNA upstream 3450 10819058 ~ 10889328 (+) False kcng3
TU286456 lncRNA upstream 6827 10878917 ~ 10885951 (+) True G211370
TU286421 lncRNA upstream 74503 10817269 ~ 10818275 (+) True G211349
TU286439 lncRNA upstream 77575 10814744 ~ 10815203 (+) True G211356
TU286390 lncRNA upstream 209531 10683043 ~ 10683247 (+) True G211327
XR_005637785.1 lncRNA downstream 40219 10937601 ~ 10944265 (+) False LOC120550775
XR_005637784.1 lncRNA downstream 43915 10941297 ~ 10944265 (+) True LOC120550775
XR_005637783.1 lncRNA downstream 44536 10941918 ~ 10944265 (+) False LOC120550775
XR_005637787.1 lncRNA downstream 47547 10944929 ~ 10946643 (+) True LOC120550777
TU286508 lncRNA downstream 176116 11073498 ~ 11077953 (+) False chac2
XM_039787809.1 mRNA upstream 177548 10703348 ~ 10715230 (+) False sncgb
XM_039787810.1 mRNA upstream 177548 10703361 ~ 10715230 (+) False sncgb
XM_039787811.1 mRNA upstream 177548 10703362 ~ 10715230 (+) False sncgb
XM_039787803.1 mRNA upstream 192014 10687293 ~ 10700764 (+) True ldb3b
XM_039789383.1 mRNA downstream 5312 10902694 ~ 10907344 (+) True LOC120551799
XM_039788979.1 mRNA downstream 25041 10922423 ~ 10926710 (+) False cript
XM_039787615.1 mRNA downstream 54805 10952187 ~ 10962659 (+) True msh2
XM_039789382.1 mRNA downstream 176095 11073477 ~ 11078007 (+) True chac2
XM_039787819.1 mRNA downstream 223829 11121211 ~ 11141363 (+) True LOC120550886
TU286436 other upstream 88806 10801340 ~ 10803972 (+) True G211354
TU286403 other upstream 167219 10723533 ~ 10725559 (+) True G211336
TU286399 other upstream 177424 10702966 ~ 10715354 (+) False sncgb
TU286397 other upstream 177552 10702966 ~ 10715226 (+) True sncgb
TU286398 other upstream 177552 10702966 ~ 10715226 (+) False sncgb
TU286458 other downstream 5322 10902704 ~ 10907317 (+) False LOC120551799
TU286461 other downstream 25066 10922448 ~ 10927226 (+) True cript
XR_005637797.1 other downstream 465973 11363355 ~ 11400578 (+) False LOC120550876
TU287023 other downstream 1190303 12087685 ~ 12088135 (+) True G211777
XR_005637885.1 other downstream 1653195 12550577 ~ 12597021 (+) False LOC120551485

Expression Profile