RNA id: TU286436


Basic Information

Item Value
RNA id TU286436
length 2021
RNA type TUCP
GC content 0.49
exon number 2
gene id G211354
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10801340 ~ 10803972 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AtattaaataattttatttacataaaaatacCCAAACATTTATTCTGCATCAAATTGAACATAAAGTACAACAAAGTATCACACATAAACTGCACAGTGAACTCTGTGAACTTTAAATAAAGTACAAGTGAAGGTAAAGAAACCAAAAAATGTCATGAACATATGAACAAGGTAGGCTTCAGTGCATATTGATTGTCTACAACAGTGGACATCCAGGGGTTGTATAAAGAAAGAACtagtttcataaaaaaaaaaataataataataataataacaatgacaCATAATTAGAGAAAATTAGGGTGATTAGCTCACTGGCAGGTTTCAGTCTGTAAATGTCCTCCCATGTGGGGGTCCCACTCCCTGGGTTAAAGTCCAACAGGGGTCCACGGCTTGATGTCGGTATAATCAGGTTGATGGTGTAAGCTGGGTCAACAGATGTGCACGTCACCATCCAGTGATGTAGTTCAAAACCAAAAATGTGGGTCTGATCTGCAGctagtgattaaaaaaataataatacagaaAACCAGCCTCATAGACAAAAATCAATCATATTTTCAggaaacaaaagaacaaaaaaatcttCATGTAACCTCTAACATTATCGGTTTGGTGGGCTGGGGTAACATTTAGgatgaagctttttttttttatgccctGAACATTTATTGCAACCCAAACCCTGATCAGCCTTGTGTACACATGGCTACATCATCCTCCTCTCTACGGTAATCCACGACTGACCACCATAGGCCCCTGAAGGTCCATTTCATAATTTAGTCTCAAACATCCAAGTCAGAGTCACTGTCCGTTACTGAAAGCAGAGTTTCTCTATCTGCGCGCTCCCCGCTTTCGTCTGGACTGCACTCTCCTCCGCTAAGTGACCGCGCACCGTCGGGACACATCCGGTGGTGCTGCAACCTGTTTTTGGCTGCTGCCGCCCGGTCTCTCTGTCTCCGGTTTTTGAACCAGTTCCCAACTTGAGTCGGTGTGAGTCCGGTTGCGTGCGCCAGCTCCCGCTTCTTCCCGGGGTTCGGGTACGGGTCCTGCAGGTACCACTCTCTTAGCAGTCCCCGCGTGCGCTCTTTGAAGCAGTGCGTCTTCTGCTCACCGTCCCAGATTGTCTTCGGTAACGGGAACTTCTTCCTCACGCGGTACTTGTCAACAGGTCCGAGCGGTCGCCCCCGGAGCTTCTCTGCCTCCCGGTAGTGAGCTTCGAGCCACATCGCCTGCAGTTTACCGTGCGAGTCGCGCGTAAAGCGGTGCGTCTCCAGGATGTGATAAAGCTCGCGGAAACTTCCCGTGTGGTAGGCCACCACGGCGCGAGCCCGCTGCACGGACTCGTGCGCAGAGATGGAGTCGCGACCGTCTGCGGTCACCGGGAGTGACCAGAGGAAGCGGGCCAGCCGCTCGATGTCTCCGGTCTCCTCCAGAGTCTCGCAGACGCTGGCGATCTGCGCCGCGGAGAAACACAACCCAGGGAGAGCCAGGGGAGGACAGGCGGAAGGATGGTCCTCCGGGGACCGGGAGCGGGACAGAATAGGAGGCCCATCGGCGAAGTGTGGCAGGAGGATACGGGAGGCTGAGAAAACGTCGAGCGGCGATCGGAACACCATCTGGATGACTGAGCGAAACCAGAGAGGAGACGAAGTGTGTCTCGGAAACGGTCTGACAGAAATCTGCTGAAGTTTGACTCTTTAGCTCACCTGGGAGTCAGGGAGGGATCCTTAATCTGACTCCTTATTGGACGGACACCCTGGAGCTGATGTGGGGTTGTCATGGCAGCACTGTCAATCAAACGCCGAGGATTTATCTCCCTCCTTTTAACAAGCTGGACACAGAAAGTCTCCCTCAAATGACTCTCTATTGTGAACCATTTCATTAAACAGGAAGAAGAATAAAAGTTAACCGAAGTGCCACTTAGCCTACTAGTTTTATTTTTCCGGAGTTCTAAAACGAGTGAAAGTGCTAGAAACATATCAGGCGGTAAATTAGAATCAGTACGCCTACAAGATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286390 lncRNA upstream 118093 10683043 ~ 10683247 (+) True G211327
TU286374 lncRNA upstream 189441 10597227 ~ 10611899 (+) True G211321
TU286377 lncRNA upstream 213488 10572625 ~ 10587852 (+) True G211323
TU286372 lncRNA upstream 215243 10564246 ~ 10586097 (+) False usp54b
TU286357 lncRNA upstream 293016 10506326 ~ 10508324 (+) True G211306
TU286439 lncRNA downstream 10772 10814744 ~ 10815203 (+) True G211356
TU286421 lncRNA downstream 13297 10817269 ~ 10818275 (+) True G211349
TU286429 lncRNA downstream 15086 10819058 ~ 10912098 (+) False kcng3
TU286430 lncRNA downstream 15086 10819058 ~ 10896709 (+) True kcng3
TU286431 lncRNA downstream 15086 10819058 ~ 10889328 (+) False kcng3
XM_039787809.1 mRNA upstream 86110 10703348 ~ 10715230 (+) False sncgb
XM_039787810.1 mRNA upstream 86110 10703361 ~ 10715230 (+) False sncgb
XM_039787811.1 mRNA upstream 86110 10703362 ~ 10715230 (+) False sncgb
XM_039787805.1 mRNA upstream 100576 10687293 ~ 10700764 (+) False ldb3b
XM_039789404.1 mRNA downstream 88806 10892778 ~ 10897382 (+) False kcng3
XM_039789383.1 mRNA downstream 98722 10902694 ~ 10907344 (+) True LOC120551799
XM_039788979.1 mRNA downstream 118451 10922423 ~ 10926710 (+) False cript
XM_039787615.1 mRNA downstream 148215 10952187 ~ 10962659 (+) True msh2
XM_039789382.1 mRNA downstream 269505 11073477 ~ 11078007 (+) True chac2
TU286403 other upstream 75781 10723533 ~ 10725559 (+) True G211336
TU286399 other upstream 85986 10702966 ~ 10715354 (+) False sncgb
TU286397 other upstream 86114 10702966 ~ 10715226 (+) True sncgb
TU286398 other upstream 86114 10702966 ~ 10715226 (+) False sncgb
XR_005637805.1 other upstream 179928 10564252 ~ 10621412 (+) True usp54b
TU286458 other downstream 98732 10902704 ~ 10907317 (+) False LOC120551799
TU286461 other downstream 118476 10922448 ~ 10927226 (+) True cript
XR_005637797.1 other downstream 559383 11363355 ~ 11400578 (+) False LOC120550876
TU287023 other downstream 1283713 12087685 ~ 12088135 (+) True G211777
XR_005637885.1 other downstream 1746605 12550577 ~ 12597021 (+) False LOC120551485

Expression Profile