RNA id: TU286456


Basic Information

Item Value
RNA id TU286456
length 367
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G211370
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10878917 ~ 10885951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTTGCAGAGCTCCGCAAGCTCGTGGTCTGCAAGTACTACTTTTATTTACCCGCCACTGTGGCTGGTAGGTTGAGCAAATTAAAATTTCCatgactggtgtgtgtgtgtgtttgtgtgtctttgtacagTACCTGATGTGTGTCGCAGGTAGACTCTCATACTGCCGGGAGAGGAAGAGCTCTCTGTGGCGAAGCtggtgtttctgtttttctgttagGTCTGTCTCTGTCGggctctccttctcttcttccaACTCCTCTGCAAAAGGCACACTTGCATGTTTGTCTGCAAGCTGGATGAGGCTGTGGGAGATGTCTCGTCTTCTGTAGAAACAAACCACCTTGGCCTCCACGTTCCCACTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286421 lncRNA upstream 60642 10817269 ~ 10818275 (+) True G211349
TU286439 lncRNA upstream 63714 10814744 ~ 10815203 (+) True G211356
TU286390 lncRNA upstream 195670 10683043 ~ 10683247 (+) True G211327
TU286374 lncRNA upstream 267018 10597227 ~ 10611899 (+) True G211321
TU286377 lncRNA upstream 291065 10572625 ~ 10587852 (+) True G211323
XR_005637785.1 lncRNA downstream 51650 10937601 ~ 10944265 (+) False LOC120550775
XR_005637784.1 lncRNA downstream 55346 10941297 ~ 10944265 (+) True LOC120550775
XR_005637783.1 lncRNA downstream 55967 10941918 ~ 10944265 (+) False LOC120550775
XR_005637787.1 lncRNA downstream 58978 10944929 ~ 10946643 (+) True LOC120550777
TU286508 lncRNA downstream 187547 11073498 ~ 11077953 (+) False chac2
XM_039787809.1 mRNA upstream 163687 10703348 ~ 10715230 (+) False sncgb
XM_039787810.1 mRNA upstream 163687 10703361 ~ 10715230 (+) False sncgb
XM_039787811.1 mRNA upstream 163687 10703362 ~ 10715230 (+) False sncgb
XM_039787805.1 mRNA upstream 178153 10687293 ~ 10700764 (+) False ldb3b
XM_039789404.1 mRNA downstream 6827 10892778 ~ 10897382 (+) False kcng3
XM_039789383.1 mRNA downstream 16743 10902694 ~ 10907344 (+) True LOC120551799
XM_039788979.1 mRNA downstream 36472 10922423 ~ 10926710 (+) False cript
XM_039787615.1 mRNA downstream 66236 10952187 ~ 10962659 (+) True msh2
XM_039789382.1 mRNA downstream 187526 11073477 ~ 11078007 (+) True chac2
TU286436 other upstream 74945 10801340 ~ 10803972 (+) True G211354
TU286403 other upstream 153358 10723533 ~ 10725559 (+) True G211336
TU286399 other upstream 163563 10702966 ~ 10715354 (+) False sncgb
TU286397 other upstream 163691 10702966 ~ 10715226 (+) True sncgb
TU286458 other downstream 16753 10902704 ~ 10907317 (+) False LOC120551799
TU286461 other downstream 36497 10922448 ~ 10927226 (+) True cript
XR_005637797.1 other downstream 477404 11363355 ~ 11400578 (+) False LOC120550876
TU287023 other downstream 1201734 12087685 ~ 12088135 (+) True G211777
XR_005637885.1 other downstream 1664626 12550577 ~ 12597021 (+) False LOC120551485

Expression Profile