RNA id: TU286461


Basic Information

Item Value
RNA id TU286461
length 2085
RNA type TUCP
GC content 0.37
exon number 5
gene id cript
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10922423 ~ 10927226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGAAATTACCGGAAGTTTACAAACAGTAACCGAGCAAGCTAAGATTTAgctaacatttttattttattttgactaaCCGTGGAAAAGTATCGgtttaaaacaaacatagaGAAAAGATGGTTTGTGAAAAGTGCGAGAAGAAGCTTGGTAAAGTCATCACACCTGACACCTGGAAAGATGGAGCACGGAATACAACAGAGGGTGGTGGGCGTAAGCTAAATGAAAACAAGATGCTGACTTCTAAGAAAGCCAGGTTTGACCCATACAGCAAGACAGGCTTTGCTACCTGCAGGATCTGCAAGAGCTCAGTTCATCAGTCTGGATCACACTACTGTCAGGGCTGTGCCTACAAGAAAGGAATCTGTGCAATGTGTGGACGGAAAGTTTTGGACACCAAGAACTACAAACAGACATCTGTGTGACAGTGGGCTGATCAGAGAACTGTTCTATGAGTGAATAATGGGGGATGGGGATGTGACTGATGTTCATGTTTGTCATCTTGTCACATTTTCAGTATGTTTCCAAAATGTCCTTCTCACCATACAGCTATAATGCTTTTGTCTTATTTTTCCCACCtttgtgaaagagagagatttgGACCTGGCTTTGCCCTCTTATTACAGAATATCATATAATGCCACTGGAACTATTACAGTGGCCATAAACAGGGAAGCACTGTTGTATCCAAATACATCACCGGTCATTACCTGTTGAGGCTTctagattttttttgtatattttaaatTCAGTACTTAGGCTTTGATTCTTTGCTTTTAAATAAGTTGATTTCTGTATGTAATATATCAAGCGTTTGATTTAattaaacaattaaatatgAAGGACATTTGACAGGATTCTCAACCATAAGCCATAAAGGGTACAGTTTTAGCCTCTTACGCACAACATACTCATATTCGTCCTATATGCCTGTAATAATTGGTTTACTCTTACATAATCATATTTGGAAACTGCATGCTGCACTGTCAGTGAACCCCCCCCCATCTCCATTGCTGTCAGAGATAAAGGTTATAGTTCACAGGATTTTGATATTTAAAGGCCTTGCTCTCCCTCAGGCCTTCAACCACATGTGCGCACTCTTGTTTTTATGTCTCATTATTGATTTATGCAGTTGTACCACAGCACAAAAACAGCATCAGTATCCAGCTAGCGCAcataatatacagtaggtcATGTTGGGATGTAGCAAATGAGTCATTAACCTGCCCTGTTTGCTTAATATATCACTGCCCTTTTGCTCCTGTTATTCTGTGTGCTAGTGCATTTAGGACATCAGTATTTTATCTGTTTAAGAGAACCAGTGTAGGCTTCATGTTGTGGTTTGAAATTTGGGGAGGAGAGGATCTGCGATAGACTAGTTAGAAGGCATCAAACATTTTTAGATACCCCTATCGGAGGTAGAACAAAGAACAACAATGTTTATCATATTCTCTAAGGTCTCCTAAATATGACATGGATTCTTGTATACAACTTTTTTACTGCACAAGTGAGTAAACTGACAGGTATTGTGACACACCCCATAAATAAAAGAAGTGCATCTGTAGTTGATACACCGGAACTCAAGTAATTTCATAATACAAGCTCTGGTTGATTCAAAATTTTGGTGTGACACTGAGCCAGGGGGTTCATCCatgtgtgaaaaacaaaatataattttaaacttctatatttaatacttttaagtaaaagtttGAATGCAAGTGTTAAATGCAATACACggtaaacatacacagacacctGTTTCATATTATTGGATCAGTATTATTGATGCATTCAAGAATAATTTTATCATAATCATTATATTCATCATATTTTTGTGTCTTCAtctaaaaagtaattagttcCTCTGCAGGCAGAGGAGGCTCAATATGAACTCAAAATGTACTACATACTGCTGGAAATACAGGATTATCTTTTACAAAATTAAAAGTAGGCTACCAATACCACAGTGTGGaagtactctgttacaagtaaaagtcatgctttcaaaaatgtacctaaaaatacaaaactgagcaccaaaatataaattaaaatcaGAAGTAATAGTACTCATTTTGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286429 lncRNA upstream 10350 10819058 ~ 10912098 (+) False kcng3
TU286430 lncRNA upstream 25739 10819058 ~ 10896709 (+) True kcng3
TU286431 lncRNA upstream 33120 10819058 ~ 10889328 (+) False kcng3
TU286456 lncRNA upstream 36497 10878917 ~ 10885951 (+) True G211370
TU286421 lncRNA upstream 104173 10817269 ~ 10818275 (+) True G211349
XR_005637785.1 lncRNA downstream 10375 10937601 ~ 10944265 (+) False LOC120550775
XR_005637784.1 lncRNA downstream 14071 10941297 ~ 10944265 (+) True LOC120550775
XR_005637783.1 lncRNA downstream 14692 10941918 ~ 10944265 (+) False LOC120550775
XR_005637787.1 lncRNA downstream 17703 10944929 ~ 10946643 (+) True LOC120550777
TU286508 lncRNA downstream 146272 11073498 ~ 11077953 (+) False chac2
XM_039789383.1 mRNA upstream 15104 10902694 ~ 10907344 (+) True LOC120551799
XM_039789404.1 mRNA upstream 25066 10892778 ~ 10897382 (+) False kcng3
XM_039787809.1 mRNA upstream 207218 10703348 ~ 10715230 (+) False sncgb
XM_039787810.1 mRNA upstream 207218 10703361 ~ 10715230 (+) False sncgb
XM_039787811.1 mRNA upstream 207218 10703362 ~ 10715230 (+) False sncgb
XM_039787615.1 mRNA downstream 24961 10952187 ~ 10962659 (+) True msh2
XM_039789382.1 mRNA downstream 146251 11073477 ~ 11078007 (+) True chac2
XM_039787819.1 mRNA downstream 193985 11121211 ~ 11141363 (+) True LOC120550886
XM_039787827.1 mRNA downstream 216158 11143384 ~ 11147383 (+) True LOC120550888
XM_039787174.1 mRNA downstream 315373 11242599 ~ 11244396 (+) True LOC120550580
TU286458 other upstream 15131 10902704 ~ 10907317 (+) False LOC120551799
TU286436 other upstream 118476 10801340 ~ 10803972 (+) True G211354
TU286403 other upstream 196889 10723533 ~ 10725559 (+) True G211336
TU286399 other upstream 207094 10702966 ~ 10715354 (+) False sncgb
TU286397 other upstream 207222 10702966 ~ 10715226 (+) True sncgb
XR_005637797.1 other downstream 436129 11363355 ~ 11400578 (+) False LOC120550876
TU287023 other downstream 1160459 12087685 ~ 12088135 (+) True G211777
XR_005637885.1 other downstream 1623351 12550577 ~ 12597021 (+) False LOC120551485
unassigned_transcript_1166 other downstream 1683595 12610821 ~ 12610902 (+) True trnal-aag_11
TU287259 other downstream 1793632 12720858 ~ 12809117 (+) False LOC120551603

Expression Profile