RNA id: XM_039788979.1


Basic Information

Item Value
RNA id XM_039788979.1
length 1594
RNA type mRNA
GC content 0.39
exon number 5
gene id cript
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 10922423 ~ 10927226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATCTGTTGCAAAAACGAGAAAGTGGAAGAAATTACCGGAAGTTTACAAACAGTAACCGAGCAAGCTAAGATTTAgctaacatttttattttattttgactaaCCGTGGAAAAGTATCGgtttaaaacaaacatagaGAAAAGATGGTTTGTGAAAAGTGCGAGAAGAAGCTTGGTAAAGTCATCACACCTGACACCTGGAAAGATGGAGCACGGAATACAACAGAGGGTGGTGGGCGTAAGCTAAATGAAAACAAGATGCTGACTTCTAAGAAAGCCAGGTTTGACCCATACAGCAAGACAGGCTTTGCTACCTGCAGGATCTGCAAGAGCTCAGTTCATCAGTCTGGATCACACTACTGTCAGGGCTGTGCCTACAAGAAAGGAATCTGTGCAATGTGTGGACGGAAAGTTTTGGACACCAAGAACTACAAACAGACATCTGTGTGACAGTGGGCTGATCAGAGAACTGTTCTATGAGTGAATAATGGGGGATGGGGATGTGACTGATGTTCATGTTTGTCATCTTGTCACATTTTCAGTATGTTTCCAAAATGTCCTTCTCACCATACAGCTATAATGCTTTTGTCTTATTTTTCCCACCtttgtgaaagagagagatttgGACCTGGCTTTGCCCTCTTATTACAGAATATCATATAATGCCACTGGAACTATTACAGTGGCCATAAACAGGGAAGCACTGTTGTATCCAAATACATCACCGGTCATTACCTGTTGAGGCTTctagattttttttgtatattttaaatTCAGTACTTAGGCTTTGATTCTTTGCTTTTAAATAAGTTGATTTCTGTATGTAATATATCAAGCGTTTGATTTAattaaacaattaaatatgAAGGACATTTGACAGGATTCTCAACCATAAGCCATAAAGGGTACAGTTTTAGCCTCTTACGCACAACATACTCATATTCGTCCTATATGCCTGTAATAATTGGTTTACTCTTACATAATCATATTTGGAAACTGCATGCTGCACTGTCAGTGAACCCCCCCCCATCTCCATTGCTGTCAGAGATAAAGGTTATAGTTCACAGGATTTTGATATTTAAAGGCCTTGCTCTCCCTCAGGCCTTCAACCACATGTGCGCACTCTTGTTTTTATGTCTCATTATTGATTTATGCAGTTGTACCACAGCACAAAAACAGCATCAGTATCCAGCTAGCGCAcataatatacagtaggtcATGTTGGGATGTAGCAAATGAGTCATTAACCTGCCCTGTTTGCTTAATATATCACTGCCCTTTTGCTCCTGTTATTCTGTGTGCTAGTGCATTTAGGACATCAGTATTTTATCTGTTTAAGAGAACCAGTGTAGGCTTCATGTTGTGGTTTGAAATTTGGGGAGGAGAGGATCTGCGATAGACTAGTTAGAAGGCATCAAACATTTTTAGATACCCCTATCGGAGGTAGAACAAAGAACAACAATGTTTATCATATTCTCTAAGGTCTCCTAAATATGACATGGATTCTTGTATACAACTTTTTTACTGCACAAGTGAGTAAACTGACAGGTATTGTGACACACCCCATAAATAAAAGAAGTGCATCTGTAGTTGA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286429 lncRNA upstream 10325 10819058 ~ 10912098 (+) False kcng3
TU286430 lncRNA upstream 25714 10819058 ~ 10896709 (+) True kcng3
TU286431 lncRNA upstream 33095 10819058 ~ 10889328 (+) False kcng3
TU286456 lncRNA upstream 36472 10878917 ~ 10885951 (+) True G211370
TU286421 lncRNA upstream 104148 10817269 ~ 10818275 (+) True G211349
XR_005637785.1 lncRNA downstream 10891 10937601 ~ 10944265 (+) False LOC120550775
XR_005637784.1 lncRNA downstream 14587 10941297 ~ 10944265 (+) True LOC120550775
XR_005637783.1 lncRNA downstream 15208 10941918 ~ 10944265 (+) False LOC120550775
XR_005637787.1 lncRNA downstream 18219 10944929 ~ 10946643 (+) True LOC120550777
TU286508 lncRNA downstream 146788 11073498 ~ 11077953 (+) False chac2
XM_039789383.1 mRNA upstream 15079 10902694 ~ 10907344 (+) True LOC120551799
XM_039789404.1 mRNA upstream 25041 10892778 ~ 10897382 (+) False kcng3
XM_039787809.1 mRNA upstream 207193 10703348 ~ 10715230 (+) False sncgb
XM_039787810.1 mRNA upstream 207193 10703361 ~ 10715230 (+) False sncgb
XM_039787811.1 mRNA upstream 207193 10703362 ~ 10715230 (+) False sncgb
XM_039787615.1 mRNA downstream 25477 10952187 ~ 10962659 (+) True msh2
XM_039789382.1 mRNA downstream 146767 11073477 ~ 11078007 (+) True chac2
XM_039787819.1 mRNA downstream 194501 11121211 ~ 11141363 (+) True LOC120550886
XM_039787827.1 mRNA downstream 216674 11143384 ~ 11147383 (+) True LOC120550888
XM_039787174.1 mRNA downstream 315889 11242599 ~ 11244396 (+) True LOC120550580
TU286458 other upstream 15106 10902704 ~ 10907317 (+) False LOC120551799
TU286436 other upstream 118451 10801340 ~ 10803972 (+) True G211354
TU286403 other upstream 196864 10723533 ~ 10725559 (+) True G211336
TU286399 other upstream 207069 10702966 ~ 10715354 (+) False sncgb
TU286397 other upstream 207197 10702966 ~ 10715226 (+) True sncgb
XR_005637797.1 other downstream 436645 11363355 ~ 11400578 (+) False LOC120550876
TU287023 other downstream 1160975 12087685 ~ 12088135 (+) True G211777
XR_005637885.1 other downstream 1623867 12550577 ~ 12597021 (+) False LOC120551485
unassigned_transcript_1166 other downstream 1684111 12610821 ~ 12610902 (+) True trnal-aag_11
TU287259 other downstream 1794148 12720858 ~ 12809117 (+) False LOC120551603

Expression Profile