RNA id: TU287023


Basic Information

Item Value
RNA id TU287023
length 451
RNA type TUCP
GC content 0.48
exon number 1
gene id G211777
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 12087685 ~ 12088135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTGAAACTCTCATCCATGCATTCATTACATCgagacttgactactgcaacagcCTCCTATATGGTCTCCCTTCATCTGTTTTACAAAAACTGCAATACGTTCAAAACTCTGCTGCTCGCCTCCTCACCCACACCGGTTCAAGACAACACATCACCCCTGTCCTTCAACAgcttcactggctccctgtaCAACAGCGCATCCATTACAAAGTTCTACTCATCACCTACAAAGCTCTCAATAATCTGGCCCCTCCATACCTCACAGACCTCTTACAGCACCATCGCCCCTCCAGACGCCTTCGCTCAGCTGACTTAAACCTCCTCAAACCCATCACCAAATCAACCCACCGAACTTTCGGGGACCAAGCCTTTGCAATAGCTGCCCCcagctttttttctgacatCTCAAAGTGCTTGATATGTTTGTATGTGAGGACTTTGTGACAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU287005 lncRNA upstream 51254 12035556 ~ 12036431 (+) True G211762
TU286934 lncRNA upstream 247942 11839544 ~ 11839743 (+) True G211711
TU286933 lncRNA upstream 248374 11839001 ~ 11839311 (+) True G211710
TU286929 lncRNA upstream 265639 11821804 ~ 11822046 (+) True G211706
TU286881 lncRNA upstream 352434 11733627 ~ 11735251 (+) True G211666
TU287024 lncRNA downstream 7897 12096032 ~ 12097836 (+) True G211778
TU287034 lncRNA downstream 30941 12119076 ~ 12122935 (+) True G211786
TU287033 lncRNA downstream 31873 12120008 ~ 12159253 (+) False G211785
TU287031 lncRNA downstream 60705 12148840 ~ 12159253 (+) True G211785
TU287042 lncRNA downstream 75210 12163345 ~ 12164454 (+) True G211791
XM_039787506.1 mRNA upstream 5103 12057899 ~ 12082582 (+) False LOC120550736
XM_039787509.1 mRNA upstream 5103 12058025 ~ 12082582 (+) False LOC120550736
XM_039787507.1 mRNA upstream 5103 12059830 ~ 12082582 (+) True LOC120550736
XM_039787512.1 mRNA upstream 43031 12041001 ~ 12044654 (+) False LOC120550738
XM_039787511.1 mRNA upstream 43031 12041107 ~ 12044654 (+) True LOC120550738
XM_039789155.1 mRNA downstream 38579 12126714 ~ 12130237 (+) True lrit1b
XM_039789156.1 mRNA downstream 42889 12131024 ~ 12135718 (+) True LOC120551661
XM_039787282.1 mRNA downstream 77947 12166082 ~ 12173299 (+) True chst3b
XM_039789248.1 mRNA downstream 187474 12275609 ~ 12306162 (+) True pax2b
XM_039789245.1 mRNA downstream 187474 12275609 ~ 12306162 (+) False pax2b
XR_005637797.1 other upstream 687107 11363355 ~ 11400578 (+) False LOC120550876
TU286461 other upstream 1160459 10922448 ~ 10927226 (+) True cript
TU286458 other upstream 1180368 10902704 ~ 10907317 (+) False LOC120551799
TU286436 other upstream 1283713 10801340 ~ 10803972 (+) True G211354
TU286403 other upstream 1362126 10723533 ~ 10725559 (+) True G211336
XR_005637885.1 other downstream 462442 12550577 ~ 12597021 (+) False LOC120551485
unassigned_transcript_1166 other downstream 522686 12610821 ~ 12610902 (+) True trnal-aag_11
TU287259 other downstream 632723 12720858 ~ 12809117 (+) False LOC120551603
TU287481 other downstream 1292081 13380216 ~ 13380934 (+) True G212108
TU287720 other downstream 1913912 14002047 ~ 14032589 (+) False G212254

Expression Profile