RNA id: XM_039787170.1


Basic Information

Item Value
RNA id XM_039787170.1
length 972
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC120550572
representative True

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 3829315 ~ 3832201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTACATTTTCTCCAAAAGGTGATTGGGTGCTACATTCAAGTGATCCTCAATTCAAAGAAGTCTGCTGACCGACTATACAACATGAATCACTATGTAATGGGACTAATTTTACATGGCACAAGAGAGCAGATGGCCAGGCAAGGGTTGACAAATGTCACATTTGATGATTATGATGGAGCCATTGGATTTGTTAATATACGAAATATGCACTGGAAGTTTGTGtATCTTCATGCCCTCTCAAGCCACATTTTTGTGGTCGATCCTCTGCAAGGGACAAATGAAGTTGAGGACTCCAGAAAGGCTGGCCACAGATTTGGACAGTACTTCAAGATGCGCCGGAACAGACTTGGAAAGGAGGACTGGGTTAACATAAAGTGGAAGCCTGGGAAGATAACCCACACCTTTCAGGAAGATGTAACCAGTTGTGGGGTCTTTGTCATGCAGATGGCCAAGATGACAGTGATGGAGTTTCCAAAGATGCCACAGTCGTTTCAGATTGACTCATCCAAAGAGTCTCTTAAAAATCAAAGAAGACTCATGGCAGAAGAAATTCTCATGGCATCAGTTTCAAAGGATGAGTTCTGCTCCTTCTGTGGAAATAAGAACCTGCCTGCTGGAGATGATGTTTGGATTCAGTGTGGAAATTGCACAAGATGGTTTCACACGCAGTGCCTAGGAATGACTGCAGCACAAATACCAAACAAAAATACCCCTTgggattgtgtgttgtgtatcagCCCTAGCTAAAGAGGCTGTAGcaTCTTCATGCCCTCTCAAGCCACATTTTTGTGGTTGATCCTCTGCAAGGGACAAATGAAGTTGAGGACTCCAGAAAGGCTGGCCACAGATTTGAGTAATATCAAATAGATTAATGGAAATAGATACGTAACACACATATTTGCTACATACACTAGACGTGAAGGTTAaccaaaatacattttcctttaATCCTGTAGACAGTACTTCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637753.1 lncRNA upstream 8695 3819101 ~ 3820620 (+) False LOC120550571
XR_005637752.1 lncRNA upstream 8699 3819101 ~ 3820616 (+) False LOC120550571
XR_005637751.1 lncRNA upstream 38640 3787973 ~ 3790675 (+) True LOC120550570
XR_005637748.1 lncRNA upstream 38640 3789446 ~ 3790675 (+) False LOC120550570
XR_005637749.1 lncRNA upstream 38918 3789446 ~ 3790397 (+) False LOC120550570
TU284122 lncRNA downstream 189460 4021661 ~ 4042686 (+) True G209650
XR_005637865.1 lncRNA downstream 253123 4085324 ~ 4087838 (+) True LOC120551338
TU284176 lncRNA downstream 351372 4183573 ~ 4186720 (+) True G209684
TU284175 lncRNA downstream 353396 4185597 ~ 4186720 (+) False G209684
TU284177 lncRNA downstream 355892 4188093 ~ 4188482 (+) True G209685
XM_039789071.1 mRNA upstream 141538 3670590 ~ 3687777 (+) True LOC120551587
XM_039789069.1 mRNA upstream 208136 3587079 ~ 3621179 (+) True LOC120551583
XM_039788750.1 mRNA upstream 1295852 2526662 ~ 2533463 (+) True LOC120551356
XM_039789064.1 mRNA upstream 1466956 2344346 ~ 2362359 (+) True LOC120551576
XM_039788394.1 mRNA upstream 1516866 2302291 ~ 2312449 (+) True LOC120551177
XM_039789000.1 mRNA downstream 110180 3942381 ~ 3943422 (+) True atoh1c
XM_039788724.1 mRNA downstream 166172 3998373 ~ 4028282 (+) False LOC120551345
XM_039788723.1 mRNA downstream 166172 3998373 ~ 4028281 (+) True LOC120551345
XM_039788725.1 mRNA downstream 166172 3998373 ~ 4028281 (+) False LOC120551345
XM_039788726.1 mRNA downstream 166172 3998373 ~ 4028279 (+) False LOC120551345
TU283994 other upstream 6064 3818853 ~ 3823251 (+) True LOC120550571
TU283997 other upstream 6064 3821899 ~ 3823251 (+) False LOC120550571
TU283964 other upstream 182318 3646009 ~ 3646997 (+) True G209514
TU283708 other upstream 995641 2779741 ~ 2833674 (+) False G209344
TU283706 other upstream 1032180 2715645 ~ 2797135 (+) True G209344
XR_005637866.1 other downstream 166172 3998373 ~ 4027498 (+) False LOC120551345
XR_005637777.1 other downstream 1759135 5591336 ~ 5687896 (+) False LOC120550763
XR_005637869.1 other downstream 2251234 6083435 ~ 6092738 (+) False kctd2
TU284934 other downstream 2638455 6470656 ~ 6472155 (+) True G210266
TU285573 other downstream 4225542 8057743 ~ 8062269 (+) True dydc2

Expression Profile