RNA id: XM_039787206.1


Basic Information

Item Value
RNA id XM_039787206.1
length 2256
RNA type mRNA
GC content 0.50
exon number 10
gene id dhx32a
representative False

Chromosome Information

Item Value
chromosome id NC_053132.1
NCBI id CM020929.1
chromosome length 33651559
location 11570717 ~ 11577632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGAAAGCCACGCTGGGAAGAAATTACGCGCCGGTGCGCACTGTTCGTCAGCCAGCCCCAGCCAGAACAACTCCAAACTTTTAACAGcttaataaatataattttagcAATTAAGAAACCGAGTGGAGGAATTCTGGTAATGTATCGCATAATCCGTCCAAGTTCGCGAACATAGACTATATGgtagactgtttttttttttttttttttttatatttgacagAAAAGAAATGGACCCGTAGTTAGAGTGGTAGGAAAACCTTTGTGGGCTCTCGTCCGGTTTgagaaatatatgtgtgtgtgtgtcatgtcgGATGAAAATAATTCAGCGGAGCCAGACATTTGTCCTAAAAGTGAGGAATGTCCTGCGGAAGATTCATTTGGCTTCGGAGATGATCTGGAGTTAAATCAGTTCGATGGATTGCCCTTTTCCTCCCGTTACTACAAATTactaaaagagagaaagagtctGCCAGTGTGGAAGGTCAGATGCGACTTTAAAGATGCTCTGGTAAACAACCAACTGGTTATTGTGTCTGGGACAGCAAAGACTGGGAGGAGTACACAGATCCCTCAGTGGTGTGCAGAGTTCTGTCTGTCCGCCCAGTACCAGCACGGCATGGTTGTGTGCACGCAGACCAACAGACAACAGGCTGTAGATCTGGCCTTGCGCGTGGCAGATGAAATGGACGTCAACATAGGCCATGAAGTGGGCTACACCATCCCTCTGGAGACCTGCTGCTCTTCCGACACTGTTCTGAGGTACTGCACTGACGATATGCTGCTGAGAGAAATGATGTCAGACCCTTTTCTGGAACACTTCGGGGTCATTATCATCGACCAGGCCCATGAGAGGACAGTAAGCACAGACATACTACTGGGTCTCCTAAAGGACATCCTGCTGCAGAGGCCTGAGCTCAGAGTGGTGGTCCTCGCCATCCCGCCTGTGACCGACAAGCTGCTGAGCCACCACGGCAGCATCCCGCTCATCAGTCTGGAAGCCTCGTCTCCTGCTGAGGCGGTCCACAGCAACTGCGGCAACAAAGACTACTTCTTCTCAGCGCTCAGACTGGTGCTGGAGATTCATCGAACCAAAGAGGATGGAGATGTGGTTGTGTTTTTTGCCTCAGCTGAGGAGGTTAATTGTGCCCACAGCATCCTCCAGAGAGAAGGCACCAGGCTGGGAGCCGAGCTGGGTCAGATGGTGCCTGTAGTCCTGTGTCCACGCCGAGGAGGGCCACTGCCTGCCCTCACTGACAAACCAGGCTCCAAGAGGTCCAGGATGGTTTTCCTCTCTACCAAACAGGGGGAGGATATTTGGTGGCCCACCAAGTCTGTAAACTTTGTCATTGACACAGGAGTCCAAAAAAAGATGGTGTACAATCCAAGAATAAGAGCTAACTCGGAAGTACTTCAACCTATCAGTCAATGTCAGGCAGACGTACGCAGGCGGCTGTCTGGACCAACAGGTAAATGTTTCTGCCTATATCCAGAAGACAGCCAGCTTCCTTCAGAGAACTCCCCACAGATCTTGGAGTCCAACATTACACCAACAGTCCTATTCCTAAAAAGGATGGAGATAGCCGGTCTTGGACAGTGTGATTTCATCGACAGACCAGATCCCGAGGGGCTCATGCAGGCGTTGGAGGAGCTGGATTACCTCGCAGCTTTGGATGATGATGGCAACTTGTCTGAGATTGGCATCATAATGTCTGAAATCCCACTGGACCCTCAGATGGCCAAAGCCCTGCTGGCATCCTGCGAGTTTGACTGTGTGAGTGAGATGTTAACGATCGCAGCGATGCTGTCCGCGTCAAGCTGCTTCCCAGAGCCACCTGCTGGCATGACCCACGAGGCAGTCCAGTGTCACAGAAAGTTCCAGCACCCTGAAGGCGATCACTTCACCCTCATAAACATCTACAATGCCTTCAAACAAAGCCAGAGAGAACAGTACTTCACCGCTGAAAAGTGGTGCCAGGACTATTTCCTGGATTATTCCGCCCTGAAGACAGCTGAGGCCATTAGATCTGAGTTGACCGACACTCTGAACAGGATCGAGCTTCCCATCTCTGAGCCCTCCTTTGGAACCAAGACCAACACCCACAACATCAAAAGAGCTCTGCTGGCCGGCTTCTTCAtgcagTGTCTGTCCCATTCATAGATCGCTCGGGACGTAGACGGATCAGGAAACTACTTCATTCTGACACACAAGCACATGGCCCAGGTGCACCCACTCTCCAGCTACGGGGCTCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286820 lncRNA upstream 113156 11453221 ~ 11457561 (+) True LOC120550877
XR_005637798.1 lncRNA upstream 114033 11453228 ~ 11456684 (+) False LOC120550877
TU286510 lncRNA upstream 490307 11080115 ~ 11080410 (+) True G211417
TU286508 lncRNA upstream 492764 11073498 ~ 11077953 (+) False chac2
XR_005637787.1 lncRNA upstream 624074 10944929 ~ 10946643 (+) True LOC120550777
TU286879 lncRNA downstream 148997 11725141 ~ 11727426 (+) True G211665
TU286881 lncRNA downstream 157483 11733627 ~ 11735251 (+) True G211666
TU286929 lncRNA downstream 245660 11821804 ~ 11822046 (+) True G211706
TU286933 lncRNA downstream 262857 11839001 ~ 11839311 (+) True G211710
TU286934 lncRNA downstream 263400 11839544 ~ 11839743 (+) True G211711
XM_039787204.1 mRNA upstream 1437 11496582 ~ 11569280 (+) True LOC120550601
XM_039789395.1 mRNA upstream 76072 11476964 ~ 11494645 (+) True c21h10orf90
XM_039789396.1 mRNA upstream 76072 11476964 ~ 11494645 (+) False c21h10orf90
XM_039787802.1 mRNA upstream 170139 11363355 ~ 11400578 (+) True LOC120550876
XM_039787174.1 mRNA upstream 326321 11242599 ~ 11244396 (+) True LOC120550580
XM_039787211.1 mRNA downstream 3061 11579205 ~ 11583114 (+) True uros
XM_039787213.1 mRNA downstream 4175 11580319 ~ 11583114 (+) False uros
XM_039787208.1 mRNA downstream 7045 11583189 ~ 11587630 (+) False mmp21
XM_039787209.1 mRNA downstream 7052 11583196 ~ 11587435 (+) False mmp21
XM_039787207.1 mRNA downstream 7053 11583197 ~ 11587630 (+) True mmp21
XR_005637797.1 other upstream 170139 11363355 ~ 11400578 (+) False LOC120550876
TU286461 other upstream 643491 10922448 ~ 10927226 (+) True cript
TU286458 other upstream 663400 10902704 ~ 10907317 (+) False LOC120551799
TU286436 other upstream 766745 10801340 ~ 10803972 (+) True G211354
TU286403 other upstream 845158 10723533 ~ 10725559 (+) True G211336
TU287023 other downstream 511541 12087685 ~ 12088135 (+) True G211777
XR_005637885.1 other downstream 974433 12550577 ~ 12597021 (+) False LOC120551485
unassigned_transcript_1166 other downstream 1034677 12610821 ~ 12610902 (+) True trnal-aag_11
TU287259 other downstream 1144714 12720858 ~ 12809117 (+) False LOC120551603
TU287481 other downstream 1804072 13380216 ~ 13380934 (+) True G212108

Expression Profile